Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_153600.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_153600.1 SmLINC03769-IBu 0.80 2.00e-04 3.00e-03
Smp_153600.1 SmLINC04957-IBu 0.95 2.53e-08 4.00e-06
Smp_153600.1 SmLINC05989-IBu 0.87 2.13e-05 4.00e-04
Smp_153600.1 SmLINC06128-IBu 0.90 2.87e-06 1.00e-04
Smp_153600.1 SmLINC06890-IBu 0.95 4.37e-08 5.82e-06
Smp_153600.1 SmLINC06903-IBu 0.94 9.24e-08 9.71e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 Smp_153600.1 0.97 1.66e-09 7.05e-07
Smp_055770.1 Smp_153600.1 0.97 4.08e-10 2.87e-07
Smp_071380.2 Smp_153600.1 0.91 1.26e-06 6.30e-05
Smp_079970.1 Smp_153600.1 0.99 2.12e-14 6.25e-10
Smp_134410.1 Smp_153600.1 0.94 1.70e-07 1.56e-05
Smp_152780.1 Smp_153600.1 0.98 6.73e-12 2.15e-08
Smp_206200.1 Smp_153600.1 0.95 2.35e-08 4.05e-06