Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_153580.1 Data

Correlation between Smp_153580.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_153580.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_153580.1 0 3.07 2.74 5.08 7.14

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_153580.1 SmLINC00001-IBu 0.87 2.03e-05 4.00e-04
Smp_153580.1 SmLINC00004-IBu 0.85 4.83e-05 8.00e-04
Smp_153580.1 SmLINC01520-IBu 0.81 2.00e-04 2.60e-03
Smp_153580.1 SmLINC02029-IBu 0.81 2.00e-04 2.30e-03
Smp_153580.1 SmLINC02376-IBu 0.86 3.36e-05 6.00e-04
Smp_153580.1 SmLINC02539-IBu 0.81 2.00e-04 2.50e-03
Smp_153580.1 SmLINC02577-IBu 0.83 1.00e-04 1.50e-03
Smp_153580.1 SmLINC02630-IBu -0.82 1.00e-04 1.80e-03
Smp_153580.1 SmLINC02783-IBu 0.83 9.88e-05 1.40e-03
Smp_153580.1 SmLINC03326-IBu 0.86 3.01e-05 5.00e-04
Smp_153580.1 SmLINC04235-IBu 0.90 3.52e-06 1.00e-04
Smp_153580.1 SmLINC04423-IBu 0.80 3.00e-04 3.10e-03
Smp_153580.1 SmLINC04627-IBu 0.85 5.77e-05 9.00e-04
Smp_153580.1 SmLINC05404-IBu 0.82 1.00e-04 1.80e-03
Smp_153580.1 SmLINC05684-IBu 0.85 4.42e-05 7.00e-04
Smp_153580.1 SmLINC06239-IBu 0.89 6.94e-06 2.00e-04

Correlation between Smp_153580.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_153580.1 0 3.07 2.74 5.08 7.14
Smp_159650.1 0 4.04 4.18 8.26 10.40

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159650.1 Smp_153580.1 0.92 8.69e-07 4.83e-05