Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_152990.1 Data

Correlation between Smp_152990.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
Smp_152990.1 0 3.96 6.54 9.43 9.22

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152990.1 SmLINC04366-IBu -0.54 3.68e-02 8.92e-02

Correlation between Smp_152990.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_152990.1 0 3.96 6.54 9.43 9.22

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152990.1 SmLINC00171-IBu 0.91 1.83e-06 7.91e-05
Smp_152990.1 SmLINC00266-IBu 0.81 2.00e-04 2.40e-03
Smp_152990.1 SmLINC00369-IBu 0.90 3.92e-06 1.00e-04
Smp_152990.1 SmLINC00477-IBu 0.92 7.43e-07 4.16e-05
Smp_152990.1 SmLINC00484-IBu 0.88 1.33e-05 3.00e-04
Smp_152990.1 SmLINC00548-IBu 0.89 7.88e-06 2.00e-04
Smp_152990.1 SmLINC00633-IBu 0.88 8.94e-06 2.00e-04
Smp_152990.1 SmLINC01066-IBu 0.93 3.32e-07 2.36e-05
Smp_152990.1 SmLINC01084-IBu 0.82 1.00e-04 2.00e-03
Smp_152990.1 SmLINC01122-IBu 0.84 7.63e-05 1.10e-03
Smp_152990.1 SmLINC01139-IBu 0.87 1.73e-05 3.00e-04
Smp_152990.1 SmLINC01231-IBu 0.80 3.00e-04 3.40e-03
Smp_152990.1 SmLINC01431-IBu 0.87 1.69e-05 3.00e-04
Smp_152990.1 SmLINC01433-IBu 0.93 3.26e-07 2.33e-05
Smp_152990.1 SmLINC01435-IBu 0.91 1.29e-06 6.17e-05
Smp_152990.1 SmLINC01538-IBu 0.89 5.87e-06 1.00e-04
Smp_152990.1 SmLINC01569-IBu 0.85 4.37e-05 7.00e-04
Smp_152990.1 SmLINC01733-IBu 0.86 3.25e-05 6.00e-04
Smp_152990.1 SmLINC01746-IBu 0.92 7.61e-07 4.22e-05
Smp_152990.1 SmLINC01822-IBu 0.90 4.01e-06 1.00e-04
Smp_152990.1 SmLINC02084-IBu 0.90 3.34e-06 1.00e-04
Smp_152990.1 SmLINC02546-IBu 0.86 2.65e-05 5.00e-04
Smp_152990.1 SmLINC03108-IBu 0.87 1.54e-05 3.00e-04
Smp_152990.1 SmLINC03309-IBu 0.92 9.39e-07 4.90e-05
Smp_152990.1 SmLINC03542-IBu 0.90 2.69e-06 1.00e-04
Smp_152990.1 SmLINC03693-IBu 0.96 1.19e-08 2.40e-06
Smp_152990.1 SmLINC03927-IBu 0.82 1.00e-04 1.80e-03
Smp_152990.1 SmLINC04054-IBu 0.86 3.22e-05 6.00e-04
Smp_152990.1 SmLINC04345-IBu 0.84 8.20e-05 1.20e-03
Smp_152990.1 SmLINC04432-IBu 0.88 8.85e-06 2.00e-04
Smp_152990.1 SmLINC04475-IBu 0.91 1.70e-06 7.50e-05
Smp_152990.1 SmLINC04521-IBu 0.86 2.75e-05 5.00e-04
Smp_152990.1 SmLINC04663-IBu 0.87 1.86e-05 4.00e-04
Smp_152990.1 SmLINC04684-IBu 0.89 8.18e-06 2.00e-04
Smp_152990.1 SmLINC04747-IBu 0.80 2.00e-04 3.00e-03
Smp_152990.1 SmLINC04759-IBu 0.85 4.62e-05 8.00e-04
Smp_152990.1 SmLINC04769-IBu 0.87 1.66e-05 3.00e-04
Smp_152990.1 SmLINC05009-IBu 0.86 2.55e-05 5.00e-04
Smp_152990.1 SmLINC05147-IBu 0.92 6.32e-07 3.71e-05
Smp_152990.1 SmLINC05171-IBu 0.89 6.14e-06 1.00e-04
Smp_152990.1 SmLINC05258-IBu 0.93 3.24e-07 2.32e-05
Smp_152990.1 SmLINC05870-IBu 0.84 7.53e-05 1.10e-03
Smp_152990.1 SmLINC06007-IBu 0.88 1.14e-05 2.00e-04
Smp_152990.1 SmLINC06010-IBu 0.82 1.00e-04 1.90e-03
Smp_152990.1 SmLINC06221-IBu 0.97 1.12e-09 5.09e-07
Smp_152990.1 SmLINC06418-IBu 0.92 5.94e-07 3.55e-05
Smp_152990.1 SmLINC06444-IBu 0.86 3.03e-05 5.00e-04
Smp_152990.1 SmLINC06449-IBu 0.88 1.32e-05 3.00e-04
Smp_152990.1 SmLINC06536-IBu 0.91 1.75e-06 7.64e-05
Smp_152990.1 SmLINC06538-IBu 0.83 8.93e-05 1.30e-03
Smp_152990.1 SmLINC06543-IBu 0.95 1.85e-08 3.23e-06

Correlation between Smp_152990.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_152990.1 0 3.96 6.54 9.43 9.22
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152990.1 Smp_020760.2 0.90 4.19e-06 1.00e-04
Smp_152990.1 Smp_045200.1 0.96 8.80e-09 2.09e-06
Smp_152990.1 Smp_055340.2 0.90 3.53e-06 1.00e-04
Smp_152990.1 Smp_058660.1 0.94 9.89e-08 1.07e-05
Smp_152990.1 Smp_082580.1 0.92 9.67e-07 5.21e-05
Smp_152990.1 Smp_084270.1 0.90 2.87e-06 1.00e-04
Smp_152990.1 Smp_118560.1 0.93 3.51e-07 2.57e-05
Smp_152990.1 Smp_123200.1 0.92 7.81e-07 4.48e-05
Smp_152990.1 Smp_125210.1 0.91 1.23e-06 6.20e-05
Smp_152990.1 Smp_134960.1 0.92 6.34e-07 3.87e-05
Smp_137320.1 Smp_152990.1 0.96 1.15e-08 2.51e-06
Smp_152990.1 Smp_141680.1 0.95 2.11e-08 3.77e-06
Smp_152990.1 Smp_145400.1 0.94 1.93e-07 1.70e-05
Smp_152990.1 Smp_151120.1 0.93 4.07e-07 2.85e-05
Smp_152990.1 Smp_163940.1 0.93 3.79e-07 2.71e-05
Smp_152990.1 Smp_170280.1 0.94 1.08e-07 1.14e-05
Smp_152990.1 Smp_172480.1 0.92 7.53e-07 4.37e-05
Smp_152990.1 Smp_172960.1 0.90 3.42e-06 1.00e-04
Smp_152990.1 Smp_175020.1 0.91 2.12e-06 9.06e-05
Smp_152990.1 Smp_194960.1 0.91 1.70e-06 7.76e-05
Smp_152990.1 Smp_194970.1 0.91 2.48e-06 1.00e-04
Smp_194980.1 Smp_152990.1 0.90 3.28e-06 1.00e-04
Smp_152990.1 Smp_200750.1 0.93 2.98e-07 2.29e-05
Smp_152990.1 Smp_205270.1 0.93 4.43e-07 3.02e-05