Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_152910.1 Data

Correlation between Smp_152910.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_152910.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_152910.1 0 -3.44 -2.76 -1.50 2.86

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152910.1 SmLINC00007-IBu 0.83 1.00e-04 1.50e-03
Smp_152910.1 SmLINC01520-IBu 0.89 5.48e-06 1.00e-04
Smp_152910.1 SmLINC02029-IBu 0.92 6.51e-07 3.79e-05
Smp_152910.1 SmLINC02539-IBu 0.84 6.96e-05 1.00e-03
Smp_152910.1 SmLINC02577-IBu 0.87 2.26e-05 4.00e-04
Smp_152910.1 SmLINC02776-IBu 0.81 1.00e-04 2.20e-03
Smp_152910.1 SmLINC02783-IBu 0.88 1.43e-05 3.00e-04
Smp_152910.1 SmLINC02786-IBu 0.97 5.06e-10 3.03e-07
Smp_152910.1 SmLINC03658-IBu 0.88 1.09e-05 2.00e-04
Smp_152910.1 SmLINC04235-IBu 0.87 2.32e-05 4.00e-04
Smp_152910.1 SmLINC04237-IBu 0.84 6.64e-05 1.00e-03
Smp_152910.1 SmLINC04627-IBu 0.82 1.00e-04 1.90e-03
Smp_152910.1 SmLINC04896-IBu 0.93 4.73e-07 3.02e-05
Smp_152910.1 SmLINC05404-IBu 0.93 3.74e-07 2.57e-05
Smp_152910.1 SmLINC05604-IBu 0.80 3.00e-04 3.10e-03
Smp_152910.1 SmLINC05684-IBu 0.92 1.18e-06 5.78e-05
Smp_152910.1 SmLINC06239-IBu 0.84 8.67e-05 1.20e-03

Correlation between Smp_152910.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_152910.1 0 -3.44 -2.76 -1.50 2.86
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 Smp_152910.1 0.98 8.02e-11 1.01e-07
Smp_152910.1 Smp_070540.1 0.96 4.11e-09 1.27e-06
Smp_089270.1 Smp_152910.1 0.94 1.20e-07 1.23e-05
Smp_152910.1 Smp_105450.1 0.95 5.56e-08 7.26e-06
Smp_152910.1 Smp_105450.2 0.94 1.83e-07 1.64e-05
Smp_126340.1 Smp_152910.1 0.95 1.57e-08 3.09e-06
Smp_152910.1 Smp_136730.1 0.92 1.09e-06 5.70e-05
Smp_137460.1 Smp_152910.1 0.93 2.05e-07 1.77e-05
Smp_152910.1 Smp_138360.1 0.90 4.34e-06 1.00e-04
Smp_139160.1 Smp_152910.1 0.90 4.74e-06 1.00e-04
Smp_152150.1 Smp_152910.1 0.96 6.17e-09 1.65e-06
Smp_164400.1 Smp_152910.1 0.97 1.84e-09 7.55e-07
Smp_152910.1 Smp_167830.1 0.94 9.09e-08 1.01e-05
Smp_152910.1 Smp_170840.1 0.95 2.65e-08 4.39e-06
Smp_181070.1 Smp_152910.1 0.91 1.56e-06 7.30e-05