Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_152900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152900.1 SmLINC00372-IBu 0.92 7.65e-07 4.24e-05
Smp_152900.1 SmLINC01316-IBu 0.89 5.35e-06 1.00e-04
Smp_152900.1 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_152900.1 SmLINC02646-IBu 0.85 5.84e-05 9.00e-04
Smp_152900.1 SmLINC04430-IBu 0.90 2.55e-06 9.99e-05
Smp_152900.1 SmLINC05559-IBu 0.89 6.81e-06 2.00e-04
Smp_152900.1 SmLINC06490-IBu 0.91 2.07e-06 8.62e-05
Smp_152900.1 SmLINC06700-IBu 0.91 1.30e-06 6.18e-05
Smp_152900.1 SmLINC06836-IBu 0.90 3.72e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_152900.1 0.90 2.54e-06 1.00e-04
Smp_152900.1 Smp_032120.1 0.93 2.85e-07 2.22e-05
Smp_152900.1 Smp_036270.3 0.91 1.68e-06 7.69e-05
Smp_063650.3 Smp_152900.1 0.90 3.57e-06 1.00e-04
Smp_098890.1 Smp_152900.1 0.94 1.07e-07 1.13e-05
Smp_159070.3 Smp_152900.1 0.92 6.73e-07 4.04e-05
Smp_152900.1 Smp_160410.1 0.91 2.14e-06 9.15e-05
Smp_152900.1 Smp_168800.1 0.92 1.14e-06 5.86e-05
Smp_194060.1 Smp_152900.1 0.92 6.40e-07 3.90e-05
Smp_200120.1 Smp_152900.1 0.96 5.18e-09 1.47e-06