Schistosoma mansoni lncRNAs Database
This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, VinÃcius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.
Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.
Smp_152780.1 Data
Expression Fold Change Data [log2(FC)] - Download data
Pearson Correlation Coefficient Data - Download data
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC02678-IBu | 0 | -3.18 | -2.40 | -3.22 | -5.56 |
| SmLINC04957-IBu | 0 | -2.62 | -5.90 | -3.92 | -7.44 |
| SmLINC05989-IBu | 0 | -1.59 | -3.64 | -6.05 | -6.59 |
| SmLINC06128-IBu | 0 | -1.91 | -4.82 | -10.42 | -10.44 |
| SmLINC06890-IBu | 0 | -2.18 | -6.70 | -7.95 | -9.08 |
| SmLINC06903-IBu | 0 | -1.36 | -4.25 | -5.91 | -3.41 |
| Smp_152780.1 | 0 | -4.06 | -8.92 | -8.72 | -11.55 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_152780.1 | SmLINC02678-IBu | 0.85 | 5.83e-05 | 9.00e-04 |
| Smp_152780.1 | SmLINC04957-IBu | 0.93 | 3.58e-07 | 2.49e-05 |
| Smp_152780.1 | SmLINC05989-IBu | 0.85 | 5.51e-05 | 9.00e-04 |
| Smp_152780.1 | SmLINC06128-IBu | 0.89 | 5.54e-06 | 1.00e-04 |
| Smp_152780.1 | SmLINC06890-IBu | 0.90 | 2.65e-06 | 1.00e-04 |
| Smp_152780.1 | SmLINC06903-IBu | 0.89 | 7.40e-06 | 2.00e-04 |
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC04957-IBu | 0 | -2.62 | -5.90 | -3.92 | -7.44 |
| SmLINC06890-IBu | 0 | -2.18 | -6.70 | -7.95 | -9.08 |
| Smp_002510.1 | 0 | -3.00 | -2.99 | -4.71 | -4.29 |
| Smp_003770.1 | 0 | -2.73 | -3.76 | -4.30 | -3.65 |
| Smp_005880.1 | 0 | -1.71 | -5.17 | -4.43 | -5.19 |
| Smp_006560.1 | 0 | -3.55 | -6.46 | -6.31 | -5.44 |
| Smp_009650.1 | 0 | -2.22 | -4.12 | -4.36 | -3.86 |
| Smp_014400.5 | 0 | -2.15 | -4.06 | -6.32 | -9.42 |
| Smp_016730.1 | 0 | -3.42 | -4.55 | -5.13 | -5.31 |
| Smp_018880.1 | 0 | -2.71 | -8.49 | -10.03 | -6.16 |
| Smp_019750.2 | 0 | -2.70 | -5.17 | -4.10 | -4.19 |
| Smp_020550.1 | 0 | -3.71 | -4.02 | -4.24 | -5.10 |
| Smp_021730.1 | 0 | -2.52 | -3.78 | -4.00 | -3.90 |
| Smp_030500.1 | 0 | -2.77 | -6.42 | -6.74 | -6.44 |
| Smp_032980.1 | 0 | -3.49 | -10.60 | -12.19 | -12.01 |
| Smp_033400.1 | 0 | -2.69 | -7.71 | -5.07 | -4.27 |
| Smp_034550.1 | 0 | -2.91 | -5.29 | -2.60 | -4.93 |
| Smp_035270.2 | 0 | -2.51 | -3.90 | -3.56 | -3.15 |
| Smp_036250.1 | 0 | -3.24 | -3.82 | -4.15 | -3.72 |
| Smp_038100.1 | 0 | -2.11 | -3.55 | -4.08 | -3.42 |
| Smp_038530.1 | 0 | -2.20 | -4.62 | -4.98 | -6.68 |
| Smp_050830.1 | 0 | -1.69 | -2.62 | -4.49 | -4.19 |
| Smp_052060.1 | 0 | -2.31 | -3.14 | -4.09 | -3.50 |
| Smp_055770.1 | 0 | -5.16 | -5.96 | -12.28 | -12.28 |
| Smp_057060.1 | 0 | -3.71 | -5.93 | -6.06 | -6.08 |
| Smp_057790.1 | 0 | -3.82 | -7.29 | -4.86 | -7.43 |
| Smp_061870.1 | 0 | -2.53 | -4.47 | -5.29 | -5.38 |
| Smp_063090.1 | 0 | -2.16 | -4.16 | -3.57 | -3.93 |
| Smp_071380.2 | 0 | -3.62 | -7.62 | -10.38 | -10.26 |
| Smp_071390.1 | 0 | -3.12 | -4.67 | -2.84 | -3.82 |
| Smp_076010.1 | 0 | -2.03 | -5.17 | -3.81 | -3.82 |
| Smp_079220.1 | 0 | -2.48 | -4.55 | -6.52 | -5.99 |
| Smp_079920.1 | 0 | -2.43 | -3.90 | -3.20 | -3.57 |
| Smp_079970.1 | 0 | -3.36 | -6.77 | -9.16 | -12.28 |
| Smp_083720.1 | 0 | -2.37 | -5.50 | -6.31 | -5.77 |
| Smp_087250.1 | 0 | -2.06 | -5.90 | -3.94 | -5.02 |
| Smp_092320.1 | 0 | -1.82 | -3.08 | -5.42 | -5.28 |
| Smp_097490.1 | 0 | -3.10 | -5.15 | -2.72 | -1.99 |
| Smp_099670.1 | 0 | -3.51 | -4.19 | -5.26 | -6.78 |
| Smp_099680.1 | 0 | -3.17 | -4.14 | -4.93 | -7.18 |
| Smp_102670.1 | 0 | -2.95 | -8.79 | -12.62 | -12.62 |
| Smp_112480.1 | 0 | -3.87 | -4.82 | -3.33 | -2.83 |
| Smp_114910.1 | 0 | -3.08 | -7.52 | -7.91 | -7.70 |
| Smp_124340.1 | 0 | -2.62 | -4.99 | -7.42 | -3.75 |
| Smp_125440.1 | 0 | -4.16 | -3.48 | -3.28 | -4.46 |
| Smp_129610.1 | 0 | -3.45 | -4.74 | -3.50 | -3.64 |
| Smp_134410.1 | 0 | -2.22 | -3.88 | -6.81 | -12.78 |
| Smp_135250.1 | 0 | -4.50 | -7.60 | -5.52 | -7.87 |
| Smp_136240.9 | 0 | -3.09 | -3.16 | -4.37 | -6.52 |
| Smp_137520.1 | 0 | -2.84 | -5.66 | -3.12 | -4.79 |
| Smp_140270.1 | 0 | -2.83 | -3.04 | -4.31 | -3.33 |
| Smp_145340.1 | 0 | -2.62 | -9.51 | -6.28 | -7.06 |
| Smp_152260.1 | 0 | -3.17 | -4.39 | -4.03 | -4.71 |
| Smp_152780.1 | 0 | -4.06 | -8.92 | -8.72 | -11.55 |
| Smp_153600.1 | 0 | -2.66 | -5.24 | -5.88 | -4.89 |
| Smp_154370.1 | 0 | -2.82 | -7.17 | -3.52 | -2.90 |
| Smp_155890.1 | 0 | -3.01 | -4.45 | -2.70 | -3.71 |
| Smp_157310.1 | 0 | -3.02 | -6.78 | -4.07 | -5.91 |
| Smp_159190.1 | 0 | -3.70 | -3.60 | -3.46 | -3.88 |
| Smp_163390.1 | 0 | -8.96 | -8.96 | -8.96 | -8.96 |
| Smp_169190.1 | 0 | -3.08 | -5.99 | -19.20 | -16.89 |
| Smp_175190.1 | 0 | -3.40 | -5.32 | -6.00 | -5.17 |
| Smp_179640.1 | 0 | -2.62 | -9.51 | -6.28 | -7.06 |
| Smp_183420.1 | 0 | -2.62 | -9.51 | -6.28 | -7.06 |
| Smp_184750.1 | 0 | -1.93 | -3.13 | -4.74 | -4.46 |
| Smp_194770.1 | 0 | -2.35 | -7.85 | -7.77 | -7.92 |
| Smp_195160.1 | 0 | -1.78 | -3.62 | -7.03 | -7.47 |
| Smp_196050.1 | 0 | -3.12 | -5.35 | -6.02 | -6.99 |
| Smp_197110.1 | 0 | -1.94 | -2.50 | -4.24 | -4.44 |
| Smp_204770.1 | 0 | -2.64 | -6.46 | -5.44 | -5.13 |
| Smp_206200.1 | 0 | -1.74 | -3.03 | -14.12 | -16.70 |
| Smp_214150.1 | 0 | -3.99 | -7.32 | -3.18 | -5.90 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_152780.1 | SmLINC04957-IBu | 0.93 | 3.58e-07 | 2.60e-05 |
| Smp_152780.1 | SmLINC06890-IBu | 0.90 | 2.65e-06 | 1.00e-04 |
| Smp_002510.1 | Smp_152780.1 | 0.97 | 8.73e-10 | 4.67e-07 |
| Smp_003770.1 | Smp_152780.1 | 0.90 | 3.92e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_005880.1 | 0.92 | 8.74e-07 | 4.85e-05 |
| Smp_006560.1 | Smp_152780.1 | 0.90 | 4.59e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_009650.1 | 0.95 | 1.46e-08 | 2.95e-06 |
| Smp_014400.5 | Smp_152780.1 | 0.91 | 1.60e-06 | 7.46e-05 |
| Smp_016730.1 | Smp_152780.1 | 0.97 | 3.00e-10 | 2.36e-07 |
| Smp_018880.1 | Smp_152780.1 | 0.92 | 1.17e-06 | 5.97e-05 |
| Smp_019750.2 | Smp_152780.1 | 0.93 | 1.98e-07 | 1.73e-05 |
| Smp_152780.1 | Smp_020550.1 | 0.93 | 2.01e-07 | 1.74e-05 |
| Smp_152780.1 | Smp_021730.1 | 0.93 | 3.37e-07 | 2.49e-05 |
| Smp_030500.1 | Smp_152780.1 | 0.98 | 8.30e-11 | 1.03e-07 |
| Smp_032980.1 | Smp_152780.1 | 0.96 | 6.63e-09 | 1.74e-06 |
| Smp_033400.1 | Smp_152780.1 | 0.95 | 5.66e-08 | 7.35e-06 |
| Smp_034550.1 | Smp_152780.1 | 0.95 | 2.25e-08 | 3.93e-06 |
| Smp_035270.2 | Smp_152780.1 | 0.94 | 6.92e-08 | 8.42e-06 |
| Smp_036250.1 | Smp_152780.1 | 0.98 | 1.27e-11 | 3.20e-08 |
| Smp_038100.1 | Smp_152780.1 | 0.97 | 8.55e-10 | 4.61e-07 |
| Smp_038530.1 | Smp_152780.1 | 0.95 | 1.69e-08 | 3.24e-06 |
| Smp_152780.1 | Smp_050830.1 | 0.91 | 2.36e-06 | 9.79e-05 |
| Smp_052060.1 | Smp_152780.1 | 0.91 | 1.27e-06 | 6.33e-05 |
| Smp_055770.1 | Smp_152780.1 | 0.99 | 6.95e-13 | 5.28e-09 |
| Smp_152780.1 | Smp_057060.1 | 0.93 | 3.64e-07 | 2.64e-05 |
| Smp_152780.1 | Smp_057790.1 | 0.96 | 1.11e-08 | 2.45e-06 |
| Smp_061870.1 | Smp_152780.1 | 0.92 | 6.61e-07 | 3.99e-05 |
| Smp_063090.1 | Smp_152780.1 | 0.97 | 2.33e-10 | 2.00e-07 |
| Smp_152780.1 | Smp_071380.2 | 0.94 | 8.86e-08 | 9.96e-06 |
| Smp_071390.1 | Smp_152780.1 | 0.98 | 6.08e-11 | 8.52e-08 |
| Smp_076010.1 | Smp_152780.1 | 0.94 | 6.60e-08 | 8.15e-06 |
| Smp_152780.1 | Smp_079220.1 | 0.96 | 3.31e-09 | 1.10e-06 |
| Smp_079920.1 | Smp_152780.1 | 0.98 | 3.01e-12 | 1.31e-08 |
| Smp_079970.1 | Smp_152780.1 | 0.99 | 4.40e-14 | 9.87e-10 |
| Smp_083720.1 | Smp_152780.1 | 0.97 | 4.61e-10 | 3.10e-07 |
| Smp_087250.1 | Smp_152780.1 | 0.92 | 7.54e-07 | 4.37e-05 |
| Smp_092320.1 | Smp_152780.1 | 0.93 | 2.49e-07 | 2.03e-05 |
| Smp_097490.1 | Smp_152780.1 | 0.94 | 1.88e-07 | 1.67e-05 |
| Smp_152780.1 | Smp_099670.1 | 0.98 | 1.14e-11 | 2.97e-08 |
| Smp_152780.1 | Smp_099680.1 | 0.96 | 1.45e-08 | 2.93e-06 |
| Smp_102670.1 | Smp_152780.1 | 0.90 | 3.09e-06 | 1.00e-04 |
| Smp_112480.1 | Smp_152780.1 | 0.96 | 1.15e-08 | 2.51e-06 |
| Smp_114910.1 | Smp_152780.1 | 0.93 | 3.74e-07 | 2.68e-05 |
| Smp_124340.1 | Smp_152780.1 | 0.91 | 1.28e-06 | 6.35e-05 |
| Smp_125440.1 | Smp_152780.1 | 0.91 | 1.52e-06 | 7.17e-05 |
| Smp_129610.1 | Smp_152780.1 | 0.97 | 8.02e-10 | 4.42e-07 |
| Smp_134410.1 | Smp_152780.1 | 0.94 | 1.88e-07 | 1.67e-05 |
| Smp_152780.1 | Smp_135250.1 | 0.91 | 2.14e-06 | 9.13e-05 |
| Smp_136240.9 | Smp_152780.1 | 0.92 | 8.11e-07 | 4.60e-05 |
| Smp_137520.1 | Smp_152780.1 | 0.93 | 3.30e-07 | 2.46e-05 |
| Smp_140270.1 | Smp_152780.1 | 0.91 | 2.13e-06 | 9.10e-05 |
| Smp_145340.1 | Smp_152780.1 | 0.90 | 4.10e-06 | 1.00e-04 |
| Smp_152260.1 | Smp_152780.1 | 0.97 | 1.75e-09 | 7.30e-07 |
| Smp_152780.1 | Smp_153600.1 | 0.98 | 6.73e-12 | 2.15e-08 |
| Smp_154370.1 | Smp_152780.1 | 0.95 | 3.46e-08 | 5.26e-06 |
| Smp_155890.1 | Smp_152780.1 | 0.96 | 5.14e-09 | 1.47e-06 |
| Smp_152780.1 | Smp_157310.1 | 0.90 | 3.21e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_159190.1 | 0.92 | 8.87e-07 | 4.90e-05 |
| Smp_163390.1 | Smp_152780.1 | 0.90 | 3.79e-06 | 1.00e-04 |
| Smp_169190.1 | Smp_152780.1 | 0.91 | 1.59e-06 | 7.40e-05 |
| Smp_175190.1 | Smp_152780.1 | 0.91 | 1.29e-06 | 6.41e-05 |
| Smp_152780.1 | Smp_179640.1 | 0.90 | 4.10e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_183420.1 | 0.90 | 4.10e-06 | 1.00e-04 |
| Smp_184750.1 | Smp_152780.1 | 0.91 | 1.43e-06 | 6.89e-05 |
| Smp_194770.1 | Smp_152780.1 | 0.97 | 2.69e-10 | 2.19e-07 |
| Smp_152780.1 | Smp_195160.1 | 0.90 | 4.35e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_196050.1 | 0.96 | 3.23e-09 | 1.08e-06 |
| Smp_197110.1 | Smp_152780.1 | 0.90 | 2.63e-06 | 1.00e-04 |
| Smp_204770.1 | Smp_152780.1 | 0.98 | 2.86e-12 | 1.26e-08 |
| Smp_206200.1 | Smp_152780.1 | 0.90 | 3.69e-06 | 1.00e-04 |
| Smp_152780.1 | Smp_214150.1 | 0.94 | 1.17e-07 | 1.21e-05 |