Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

  1. Home
  2. Smp_152770.1

Smp_152770.1 Data

Correlation between Smp_152770.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_152770.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_152770.1 0 4.62 0.47 2.45 1.74

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152770.1 SmLINC00787-IBu 0.96 1.07e-08 2.23e-06
Smp_152770.1 SmLINC01230-IBu 0.96 4.38e-09 1.23e-06
Smp_152770.1 SmLINC01429-IBu 0.91 2.18e-06 8.94e-05
Smp_152770.1 SmLINC01979-IBu 0.83 1.00e-04 1.60e-03
Smp_152770.1 SmLINC03111-IBu 0.81 2.00e-04 2.50e-03
Smp_152770.1 SmLINC03116-IBu 0.93 3.89e-07 2.64e-05
Smp_152770.1 SmLINC04144-IBu 0.87 1.95e-05 4.00e-04
Smp_152770.1 SmLINC04693-IBu 0.92 7.36e-07 4.13e-05
Smp_152770.1 SmLINC06436-IBu 0.91 1.98e-06 8.36e-05
Smp_152770.1 SmLINC06667-IBu 0.98 1.38e-10 1.31e-07

Correlation between Smp_152770.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_140390.1 0 12.76 10.19 10.82 11.68
Smp_152770.1 0 4.62 0.47 2.45 1.74

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152770.1 Smp_140390.1 0.94 1.33e-07 1.32e-05