Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_152730.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_152730.1 0 -0.96 -1.50 -5.44 -5.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152730.1 SmLINC00001-IBu -0.87 1.55e-05 3.00e-04
Smp_152730.1 SmLINC00004-IBu -0.89 7.56e-06 2.00e-04
Smp_152730.1 SmLINC00266-IBu -0.80 2.00e-04 3.00e-03
Smp_152730.1 SmLINC00369-IBu -0.89 6.05e-06 1.00e-04
Smp_152730.1 SmLINC00525-IBu -0.83 1.00e-04 1.50e-03
Smp_152730.1 SmLINC00548-IBu -0.81 2.00e-04 2.50e-03
Smp_152730.1 SmLINC00556-IBu 0.82 1.00e-04 1.90e-03
Smp_152730.1 SmLINC00633-IBu -0.84 7.60e-05 1.10e-03
Smp_152730.1 SmLINC01084-IBu -0.88 1.40e-05 3.00e-04
Smp_152730.1 SmLINC01122-IBu -0.85 5.41e-05 9.00e-04
Smp_152730.1 SmLINC01431-IBu -0.92 1.16e-06 5.73e-05
Smp_152730.1 SmLINC01432-IBu -0.86 2.70e-05 5.00e-04
Smp_152730.1 SmLINC01538-IBu -0.82 1.00e-04 2.00e-03
Smp_152730.1 SmLINC01569-IBu -0.84 8.44e-05 1.20e-03
Smp_152730.1 SmLINC01733-IBu -0.85 5.56e-05 9.00e-04
Smp_152730.1 SmLINC01746-IBu -0.80 2.00e-04 2.90e-03
Smp_152730.1 SmLINC02084-IBu -0.89 7.34e-06 2.00e-04
Smp_152730.1 SmLINC02255-IBu 0.89 5.46e-06 1.00e-04
Smp_152730.1 SmLINC02394-IBu -0.85 4.94e-05 8.00e-04
Smp_152730.1 SmLINC02539-IBu -0.81 1.00e-04 2.20e-03
Smp_152730.1 SmLINC02545-IBu -0.80 3.00e-04 3.20e-03
Smp_152730.1 SmLINC02546-IBu -0.85 4.89e-05 8.00e-04
Smp_152730.1 SmLINC02630-IBu 0.88 1.01e-05 2.00e-04
Smp_152730.1 SmLINC02657-IBu 0.84 7.38e-05 1.10e-03
Smp_152730.1 SmLINC03309-IBu -0.80 3.00e-04 3.20e-03
Smp_152730.1 SmLINC03693-IBu -0.81 2.00e-04 2.70e-03
Smp_152730.1 SmLINC03927-IBu -0.86 3.92e-05 7.00e-04
Smp_152730.1 SmLINC04421-IBu -0.90 2.84e-06 1.00e-04
Smp_152730.1 SmLINC04423-IBu -0.86 3.76e-05 6.00e-04
Smp_152730.1 SmLINC04478-IBu -0.85 5.95e-05 9.00e-04
Smp_152730.1 SmLINC04521-IBu -0.86 3.85e-05 7.00e-04
Smp_152730.1 SmLINC05147-IBu -0.85 4.06e-05 7.00e-04
Smp_152730.1 SmLINC05258-IBu -0.80 3.00e-04 3.30e-03
Smp_152730.1 SmLINC05274-IBu 0.93 3.61e-07 2.50e-05
Smp_152730.1 SmLINC05284-IBu 0.86 2.78e-05 5.00e-04
Smp_152730.1 SmLINC05289-IBu -0.86 2.77e-05 5.00e-04
Smp_152730.1 SmLINC05604-IBu -0.87 1.61e-05 3.00e-04
Smp_152730.1 SmLINC05989-IBu 0.80 3.00e-04 3.30e-03
Smp_152730.1 SmLINC06024-IBu -0.85 4.65e-05 8.00e-04
Smp_152730.1 SmLINC06145-IBu -0.82 1.00e-04 1.70e-03
Smp_152730.1 SmLINC06221-IBu -0.80 2.00e-04 3.00e-03
Smp_152730.1 SmLINC06535-IBu 0.84 7.82e-05 1.10e-03
Smp_152730.1 SmLINC06543-IBu -0.80 3.00e-04 3.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_152730.1 0 -0.96 -1.50 -5.44 -5.88
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152730.1 Smp_015850.2 0.93 2.64e-07 2.11e-05
Smp_024180.2 Smp_152730.1 -0.90 3.78e-06 1.00e-04
Smp_033260.1 Smp_152730.1 -0.93 4.06e-07 2.84e-05
Smp_152730.1 Smp_035090.2 0.90 2.60e-06 1.00e-04
Smp_152730.1 Smp_040970.2 -0.90 2.88e-06 1.00e-04
Smp_050350.3 Smp_152730.1 -0.93 2.27e-07 1.90e-05
Smp_152730.1 Smp_052280.2 -0.93 2.44e-07 2.00e-05
Smp_152730.1 Smp_055340.2 -0.93 3.18e-07 2.40e-05
Smp_152730.1 Smp_056460.1 -0.92 8.44e-07 4.73e-05
Smp_152730.1 Smp_079420.1 -0.92 7.22e-07 4.24e-05
Smp_152730.1 Smp_094050.1 -0.91 1.58e-06 7.38e-05
Smp_152730.1 Smp_137000.2 -0.91 2.18e-06 9.27e-05
Smp_152730.1 Smp_156930.1 -0.90 3.59e-06 1.00e-04
Smp_152730.1 Smp_169670.1 -0.94 7.20e-08 8.65e-06
Smp_152730.1 Smp_172960.1 -0.90 4.09e-06 1.00e-04
Smp_152730.1 Smp_192780.1 -0.90 2.86e-06 1.00e-04
Smp_194860.1 Smp_152730.1 -0.92 9.84e-07 5.27e-05