Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_152150.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152150.1 SmLINC01520-IBu 0.87 2.07e-05 4.00e-04
Smp_152150.1 SmLINC02029-IBu 0.91 1.28e-06 6.14e-05
Smp_152150.1 SmLINC02376-IBu 0.83 1.00e-04 1.60e-03
Smp_152150.1 SmLINC02539-IBu 0.82 1.00e-04 2.00e-03
Smp_152150.1 SmLINC02577-IBu 0.85 4.73e-05 8.00e-04
Smp_152150.1 SmLINC02783-IBu 0.87 1.70e-05 3.00e-04
Smp_152150.1 SmLINC02786-IBu 0.94 6.76e-08 7.84e-06
Smp_152150.1 SmLINC03658-IBu 0.90 4.04e-06 1.00e-04
Smp_152150.1 SmLINC04235-IBu 0.92 6.34e-07 3.72e-05
Smp_152150.1 SmLINC04237-IBu 0.81 2.00e-04 2.50e-03
Smp_152150.1 SmLINC04627-IBu 0.85 5.14e-05 8.00e-04
Smp_152150.1 SmLINC04896-IBu 0.93 3.22e-07 2.31e-05
Smp_152150.1 SmLINC05404-IBu 0.95 5.42e-08 6.74e-06
Smp_152150.1 SmLINC05604-IBu 0.80 2.00e-04 2.90e-03
Smp_152150.1 SmLINC05684-IBu 0.91 1.20e-06 5.86e-05
Smp_152150.1 SmLINC06239-IBu 0.93 2.59e-07 1.99e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00044-IBu 0 0.32 -0.24 0.16 8.57
SmLINC00186-IBu 0 -0.08 1.30 4.43 6.88
SmLINC00394-IBu 0 -0.50 -1.27 2.08 7.78
SmLINC00523-IBu 0 0.21 -4.03 0.53 3.02
SmLINC00714-IBu 0 0.00 5.32 7.47 9.97
SmLINC00715-IBu 0 0.00 0.00 7.79 9.66
SmLINC00890-IBu 0 0.00 0.00 3.45 7.41
SmLINC01330-IBu 0 1.65 1.89 5.35 8.80
SmLINC01771-IBu 0 0.00 0.00 5.43 8.52
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02111-IBu 0 -3.32 -1.19 -3.32 4.13
SmLINC02117-IBu 0 -4.43 -0.46 1.87 4.79
SmLINC02527-IBu 0 0.00 0.00 2.95 7.34
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03684-IBu 0 1.14 -4.16 -1.10 5.16
SmLINC03685-IBu 0 5.50 2.12 3.49 9.24
SmLINC04088-IBu 0 -1.76 -2.21 1.40 5.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04339-IBu 0 1.14 -1.15 2.09 4.75
SmLINC04511-IBu 0 0.00 0.00 4.01 7.39
SmLINC04578-IBu 0 5.46 2.25 7.37 10.84
SmLINC04710-IBu 0 -0.76 -0.04 -2.76 4.43
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05450-IBu 0 2.05 1.65 0.00 9.25
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC05996-IBu 0 0.00 3.21 2.03 9.08
SmLINC06000-IBu 0 1.88 0.00 3.45 9.47
SmLINC06076-IBu 0 0.00 0.00 1.47 6.53
SmLINC06219-IBu 0 3.54 -1.21 3.40 6.68
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
SmLINC06800-IBu 0 -3.84 -1.17 -0.07 3.49
SmLINC06801-IBu 0 -0.54 0.90 -0.25 5.25
Smp_000270.1 0 -3.32 -1.95 -0.32 6.22
Smp_000500.1 0 -1.37 -5.63 -0.86 4.61
Smp_004420.1 0 0.50 1.59 6.61 9.77
Smp_026400.1 0 0.88 0.91 0.27 4.54
Smp_031020.1 0 2.29 0.46 -0.25 5.32
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_055260.1 0 -1.90 -1.11 0.06 5.74
Smp_055740.1 0 -1.21 -3.82 3.49 7.06
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_063520.1 0 3.75 2.97 5.08 8.02
Smp_064460.1 0 -0.93 -2.82 -1.18 3.70
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_074710.1 0 -1.43 -2.06 -1.85 3.56
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_078720.1 0 1.88 0.00 3.32 8.87
Smp_083800.1 0 0.54 -0.03 3.09 8.86
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_102020.2 0 -0.18 0.28 2.86 5.06
Smp_105420.1 0 1.81 1.45 7.11 9.80
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_124750.1 0 -0.94 -0.07 1.14 6.20
Smp_125010.1 0 2.81 -1.83 1.12 5.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_126430.1 0 -0.22 -4.09 2.42 4.77
Smp_128190.1 0 1.03 2.71 4.40 6.32
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_141160.1 0 0.62 1.59 2.79 5.35
Smp_141450.2 0 3.72 3.76 3.69 9.11
Smp_142020.1 0 -0.22 1.29 2.44 5.79
Smp_144510.1 0 -0.38 -0.35 0.82 3.72
Smp_145490.1 0 3.57 3.53 3.37 9.86
Smp_146180.1 0 0.60 -1.14 0.53 4.12
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_147320.1 0 0.63 -4.89 1.01 4.47
Smp_148390.1 0 2.10 -2.34 1.95 8.66
Smp_149490.1 0 0.92 1.54 2.36 4.88
Smp_151560.1 0 2.28 2.16 3.43 5.85
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_152910.1 0 -3.44 -2.76 -1.50 2.86
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_154590.1 0 1.49 -3.83 3.03 7.38
Smp_157690.1 0 0.42 0.58 4.07 8.62
Smp_158150.1 0 -5.55 -5.55 2.64 8.31
Smp_158750.1 0 2.85 3.23 3.32 7.52
Smp_159920.1 0 1.39 1.19 3.96 6.50
Smp_164040.1 0 0.77 2.16 4.05 6.32
Smp_164140.1 0 1.44 1.54 1.73 5.01
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_166100.1 0 -0.74 -0.09 1.45 4.23
Smp_166560.1 0 0.51 0.40 -0.15 4.81
Smp_166690.1 0 0.00 3.50 0.00 7.76
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_169090.1 0 -2.46 -3.97 -0.35 4.24
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_172340.1 0 1.14 -3.01 0.24 3.66
Smp_172980.1 0 -2.44 -2.43 2.35 5.58
Smp_174530.1 0 1.07 -3.50 -0.45 5.30
Smp_177100.1 0 -0.90 -1.63 -3.89 2.45
Smp_179600.1 0 -1.93 -1.93 -1.93 5.34
Smp_179710.1 0 0.24 -0.01 -0.87 4.04
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_181390.1 0 -0.28 0.93 2.24 4.62
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_200110.1 0 1.46 2.99 3.53 6.65
Smp_200410.1 0 -1.15 -0.28 0.00 3.81
Smp_201330.1 0 1.13 0.91 1.95 4.84
Smp_202830.1 0 0.98 -0.31 1.06 6.94
Smp_209060.1 0 0.56 0.29 3.49 5.62
Smp_212430.1 0 1.72 5.10 5.71 7.78
Smp_213420.1 0 0.19 1.45 1.85 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_152150.1 SmLINC00044-IBu 0.99 8.08e-14 1.43e-09
Smp_152150.1 SmLINC00186-IBu 0.93 2.23e-07 1.87e-05
Smp_152150.1 SmLINC00394-IBu 0.94 1.43e-07 1.38e-05
Smp_152150.1 SmLINC00523-IBu 0.92 7.55e-07 4.38e-05
Smp_152150.1 SmLINC00714-IBu 0.93 4.64e-07 3.12e-05
Smp_152150.1 SmLINC00715-IBu 0.90 2.69e-06 1.00e-04
Smp_152150.1 SmLINC00890-IBu 0.98 1.34e-11 3.30e-08
Smp_152150.1 SmLINC01330-IBu 0.97 7.21e-10 4.13e-07
Smp_152150.1 SmLINC01771-IBu 0.92 8.54e-07 4.77e-05
Smp_152150.1 SmLINC02029-IBu 0.91 1.28e-06 6.38e-05
Smp_152150.1 SmLINC02111-IBu 0.96 3.61e-09 1.16e-06
Smp_152150.1 SmLINC02117-IBu 0.96 5.88e-09 1.60e-06
Smp_152150.1 SmLINC02527-IBu 0.96 7.58e-09 1.90e-06
Smp_152150.1 SmLINC02786-IBu 0.94 6.76e-08 8.29e-06
Smp_152150.1 SmLINC03658-IBu 0.90 4.04e-06 1.00e-04
Smp_152150.1 SmLINC03684-IBu 0.91 1.47e-06 7.01e-05
Smp_152150.1 SmLINC03685-IBu 0.96 2.49e-09 9.17e-07
Smp_152150.1 SmLINC04088-IBu 0.98 8.28e-12 2.45e-08
Smp_152150.1 SmLINC04235-IBu 0.92 6.34e-07 3.88e-05
Smp_152150.1 SmLINC04339-IBu 0.90 3.29e-06 1.00e-04
Smp_152150.1 SmLINC04511-IBu 0.94 6.55e-08 8.11e-06
Smp_152150.1 SmLINC04578-IBu 0.92 6.40e-07 3.90e-05
Smp_152150.1 SmLINC04710-IBu 0.93 3.60e-07 2.61e-05
Smp_152150.1 SmLINC04896-IBu 0.93 3.22e-07 2.42e-05
Smp_152150.1 SmLINC05404-IBu 0.95 5.42e-08 7.14e-06
Smp_152150.1 SmLINC05450-IBu 0.90 2.56e-06 1.00e-04
Smp_152150.1 SmLINC05684-IBu 0.91 1.20e-06 6.09e-05
Smp_152150.1 SmLINC05996-IBu 0.97 4.70e-10 3.14e-07
Smp_152150.1 SmLINC06000-IBu 0.94 1.27e-07 1.28e-05
Smp_152150.1 SmLINC06076-IBu 0.95 3.18e-08 4.97e-06
Smp_152150.1 SmLINC06219-IBu 0.93 2.09e-07 1.80e-05
Smp_152150.1 SmLINC06239-IBu 0.93 2.59e-07 2.08e-05
Smp_152150.1 SmLINC06797-IBu 0.90 4.03e-06 1.00e-04
Smp_152150.1 SmLINC06800-IBu 0.92 1.01e-06 5.38e-05
Smp_152150.1 SmLINC06801-IBu 0.97 1.51e-09 6.64e-07
Smp_152150.1 Smp_000270.1 0.94 1.75e-07 1.59e-05
Smp_152150.1 Smp_000500.1 0.94 6.73e-08 8.26e-06
Smp_152150.1 Smp_004420.1 0.90 3.10e-06 1.00e-04
Smp_152150.1 Smp_026400.1 0.94 6.89e-08 8.39e-06
Smp_152150.1 Smp_031020.1 0.95 2.01e-08 3.65e-06
Smp_152150.1 Smp_041540.1 0.97 1.70e-09 7.16e-07
Smp_152150.1 Smp_055260.1 0.94 7.93e-08 9.24e-06
Smp_152150.1 Smp_055740.1 0.97 7.12e-10 4.10e-07
Smp_152150.1 Smp_056350.1 0.98 7.45e-11 9.69e-08
Smp_152150.1 Smp_063520.1 0.94 1.21e-07 1.23e-05
Smp_152150.1 Smp_064460.1 0.94 1.94e-07 1.70e-05
Smp_152150.1 Smp_070360.1 0.92 6.31e-07 3.86e-05
Smp_152150.1 Smp_070540.1 0.93 2.80e-07 2.20e-05
Smp_152150.1 Smp_074710.1 0.96 1.18e-08 2.55e-06
Smp_152150.1 Smp_076320.1 0.92 7.66e-07 4.42e-05
Smp_152150.1 Smp_077890.1 0.93 3.73e-07 2.68e-05
Smp_152150.1 Smp_078720.1 0.99 6.37e-15 3.02e-10
Smp_152150.1 Smp_083800.1 0.98 7.33e-11 9.59e-08
Smp_152150.1 Smp_089270.1 0.95 4.79e-08 6.56e-06
Smp_152150.1 Smp_095350.1 0.92 5.99e-07 3.73e-05
Smp_152150.1 Smp_102020.2 0.91 2.17e-06 9.22e-05
Smp_152150.1 Smp_105420.1 0.93 3.29e-07 2.46e-05
Smp_152150.1 Smp_105450.1 0.93 2.13e-07 1.82e-05
Smp_152150.1 Smp_105450.2 0.94 8.29e-08 9.52e-06
Smp_152150.1 Smp_112450.1 0.90 4.55e-06 1.00e-04
Smp_152150.1 Smp_121070.1 0.90 3.26e-06 1.00e-04
Smp_152150.1 Smp_124750.1 0.91 1.95e-06 8.55e-05
Smp_152150.1 Smp_125010.1 0.91 1.26e-06 6.29e-05
Smp_126340.1 Smp_152150.1 0.92 7.52e-07 4.37e-05
Smp_152150.1 Smp_126430.1 0.92 9.42e-07 5.11e-05
Smp_152150.1 Smp_128190.1 0.90 2.77e-06 1.00e-04
Smp_152150.1 Smp_130100.1 0.90 3.46e-06 1.00e-04
Smp_152150.1 Smp_130970.1 0.93 2.45e-07 2.00e-05
Smp_152150.1 Smp_136730.1 0.90 2.70e-06 1.00e-04
Smp_152150.1 Smp_137460.1 0.98 5.74e-12 1.95e-08
Smp_152150.1 Smp_137700.1 0.91 1.24e-06 6.22e-05
Smp_152150.1 Smp_138360.1 0.95 2.04e-08 3.69e-06
Smp_152150.1 Smp_139160.1 0.92 1.06e-06 5.56e-05
Smp_152150.1 Smp_141160.1 0.93 4.80e-07 3.19e-05
Smp_152150.1 Smp_141450.2 0.98 4.36e-12 1.65e-08
Smp_152150.1 Smp_142020.1 0.91 1.35e-06 6.60e-05
Smp_152150.1 Smp_144510.1 0.93 2.00e-07 1.74e-05
Smp_152150.1 Smp_145490.1 0.98 6.03e-12 2.01e-08
Smp_152150.1 Smp_146180.1 0.95 4.20e-08 6.01e-06
Smp_152150.1 Smp_146810.1 0.99 1.62e-13 2.16e-09
Smp_152150.1 Smp_147320.1 0.96 1.00e-08 2.29e-06
Smp_152150.1 Smp_148390.1 0.99 1.53e-12 8.63e-09
Smp_152150.1 Smp_149490.1 0.96 3.07e-09 1.05e-06
Smp_152150.1 Smp_151560.1 0.96 1.17e-08 2.53e-06
Smp_152150.1 Smp_152910.1 0.96 6.17e-09 1.65e-06
Smp_152150.1 Smp_154390.1 0.99 1.25e-12 7.60e-09
Smp_152150.1 Smp_154590.1 0.92 5.19e-07 3.37e-05
Smp_152150.1 Smp_157690.1 0.96 6.81e-09 1.77e-06
Smp_152150.1 Smp_158150.1 0.96 6.25e-09 1.67e-06
Smp_152150.1 Smp_158750.1 0.94 7.48e-08 8.88e-06
Smp_152150.1 Smp_159920.1 0.95 4.68e-08 6.46e-06
Smp_152150.1 Smp_164040.1 0.92 7.40e-07 4.31e-05
Smp_152150.1 Smp_164140.1 0.94 1.52e-07 1.44e-05
Smp_152150.1 Smp_164400.1 0.99 3.44e-14 8.46e-10
Smp_152150.1 Smp_166100.1 0.91 1.67e-06 7.68e-05
Smp_152150.1 Smp_166560.1 0.95 1.48e-08 2.97e-06
Smp_166690.1 Smp_152150.1 0.98 6.41e-11 8.81e-08
Smp_152150.1 Smp_167830.1 0.94 7.74e-08 9.08e-06
Smp_169090.1 Smp_152150.1 0.96 6.64e-09 1.74e-06
Smp_152150.1 Smp_170840.1 0.96 4.06e-09 1.26e-06
Smp_152150.1 Smp_172340.1 0.95 2.79e-08 4.55e-06
Smp_172980.1 Smp_152150.1 0.98 3.84e-11 6.39e-08
Smp_152150.1 Smp_174530.1 0.96 4.57e-09 1.36e-06
Smp_152150.1 Smp_177100.1 0.91 2.09e-06 8.98e-05
Smp_152150.1 Smp_179600.1 0.99 4.87e-16 5.52e-11
Smp_152150.1 Smp_179710.1 0.99 3.34e-13 3.35e-09
Smp_181070.1 Smp_152150.1 0.93 3.13e-07 2.37e-05
Smp_152150.1 Smp_181390.1 0.93 3.48e-07 2.55e-05
Smp_152150.1 Smp_194840.1 0.91 1.20e-06 6.08e-05
Smp_152150.1 Smp_194910.1 0.90 3.87e-06 1.00e-04
Smp_152150.1 Smp_200110.1 0.90 3.70e-06 1.00e-04
Smp_152150.1 Smp_200410.1 0.98 3.56e-12 1.45e-08
Smp_152150.1 Smp_201330.1 0.90 2.96e-06 1.00e-04
Smp_152150.1 Smp_202830.1 0.94 9.81e-08 1.06e-05
Smp_152150.1 Smp_209060.1 0.91 1.38e-06 6.72e-05
Smp_152150.1 Smp_212430.1 0.91 1.72e-06 7.82e-05
Smp_152150.1 Smp_213420.1 0.96 7.32e-09 1.85e-06