Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_151770.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_151770.1 0 -1.06 -3.30 2.24 3.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_151770.1 SmLINC00001-IBu 0.86 2.60e-05 5.00e-04
Smp_151770.1 SmLINC00004-IBu 0.90 3.80e-06 1.00e-04
Smp_151770.1 SmLINC00171-IBu 0.83 8.99e-05 1.30e-03
Smp_151770.1 SmLINC00266-IBu 0.84 6.45e-05 1.00e-03
Smp_151770.1 SmLINC00294-IBu -0.80 3.00e-04 3.40e-03
Smp_151770.1 SmLINC00369-IBu 0.90 2.94e-06 1.00e-04
Smp_151770.1 SmLINC00376-IBu 0.84 6.12e-05 9.00e-04
Smp_151770.1 SmLINC00525-IBu 0.94 6.11e-08 7.32e-06
Smp_151770.1 SmLINC00548-IBu 0.85 5.14e-05 8.00e-04
Smp_151770.1 SmLINC00633-IBu 0.91 1.36e-06 6.40e-05
Smp_151770.1 SmLINC01084-IBu 0.94 1.19e-07 1.15e-05
Smp_151770.1 SmLINC01122-IBu 0.84 7.10e-05 1.10e-03
Smp_151770.1 SmLINC01431-IBu 0.93 3.87e-07 2.63e-05
Smp_151770.1 SmLINC01432-IBu 0.88 1.20e-05 3.00e-04
Smp_151770.1 SmLINC01435-IBu 0.85 5.48e-05 9.00e-04
Smp_151770.1 SmLINC01520-IBu 0.83 9.75e-05 1.30e-03
Smp_151770.1 SmLINC01538-IBu 0.82 1.00e-04 1.80e-03
Smp_151770.1 SmLINC01569-IBu 0.85 5.97e-05 9.00e-04
Smp_151770.1 SmLINC02084-IBu 0.94 7.64e-08 8.53e-06
Smp_151770.1 SmLINC02376-IBu 0.82 1.00e-04 1.90e-03
Smp_151770.1 SmLINC02394-IBu 0.82 1.00e-04 1.70e-03
Smp_151770.1 SmLINC02539-IBu 0.85 4.20e-05 7.00e-04
Smp_151770.1 SmLINC02540-IBu 0.82 1.00e-04 2.00e-03
Smp_151770.1 SmLINC02545-IBu 0.91 1.54e-06 6.97e-05
Smp_151770.1 SmLINC02546-IBu 0.89 6.92e-06 2.00e-04
Smp_151770.1 SmLINC02577-IBu 0.82 1.00e-04 1.80e-03
Smp_151770.1 SmLINC03108-IBu 0.91 2.46e-06 9.73e-05
Smp_151770.1 SmLINC03309-IBu 0.82 1.00e-04 1.90e-03
Smp_151770.1 SmLINC03693-IBu 0.85 5.68e-05 9.00e-04
Smp_151770.1 SmLINC03849-IBu -0.82 1.00e-04 1.90e-03
Smp_151770.1 SmLINC03927-IBu 0.94 1.76e-07 1.52e-05
Smp_151770.1 SmLINC04421-IBu 0.96 3.09e-09 9.84e-07
Smp_151770.1 SmLINC04423-IBu 0.87 1.98e-05 4.00e-04
Smp_151770.1 SmLINC04478-IBu 0.86 2.93e-05 5.00e-04
Smp_151770.1 SmLINC04521-IBu 0.86 3.18e-05 6.00e-04
Smp_151770.1 SmLINC04684-IBu 0.86 3.67e-05 6.00e-04
Smp_151770.1 SmLINC05147-IBu 0.91 1.73e-06 7.60e-05
Smp_151770.1 SmLINC05258-IBu 0.84 8.23e-05 1.20e-03
Smp_151770.1 SmLINC05274-IBu -0.80 2.00e-04 3.00e-03
Smp_151770.1 SmLINC05289-IBu 0.88 1.30e-05 3.00e-04
Smp_151770.1 SmLINC05604-IBu 0.95 4.59e-08 6.01e-06
Smp_151770.1 SmLINC06024-IBu 0.92 8.56e-07 4.59e-05
Smp_151770.1 SmLINC06145-IBu 0.85 4.32e-05 7.00e-04
Smp_151770.1 SmLINC06221-IBu 0.80 2.00e-04 2.70e-03
Smp_151770.1 SmLINC06415-IBu 0.83 1.00e-04 1.60e-03
Smp_151770.1 SmLINC06490-IBu -0.86 2.82e-05 5.00e-04
Smp_151770.1 SmLINC06543-IBu 0.85 4.58e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_151770.1 0 -1.06 -3.30 2.24 3.05
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_151770.1 Smp_033260.1 0.95 1.74e-08 3.30e-06
Smp_038870.2 Smp_151770.1 0.91 1.66e-06 7.63e-05
Smp_151770.1 Smp_050350.3 0.93 5.06e-07 3.31e-05
Smp_151770.1 Smp_056460.1 0.96 1.13e-08 2.48e-06
Smp_151770.1 Smp_058660.1 0.92 1.08e-06 5.65e-05
Smp_151770.1 Smp_079420.1 0.92 6.55e-07 3.96e-05
Smp_151770.1 Smp_095410.1 0.92 1.11e-06 5.77e-05
Smp_151770.1 Smp_123550.1 0.90 3.75e-06 1.00e-04
Smp_151770.1 Smp_137000.2 0.93 5.11e-07 3.33e-05
Smp_151770.1 Smp_137810.1 0.90 3.02e-06 1.00e-04
Smp_151770.1 Smp_145400.1 0.91 2.03e-06 8.79e-05
Smp_151770.1 Smp_151120.1 0.92 8.25e-07 4.66e-05
Smp_151770.1 Smp_155570.1 0.91 1.70e-06 7.78e-05
Smp_151770.1 Smp_156930.1 0.96 1.19e-08 2.57e-06
Smp_151770.1 Smp_172960.1 0.96 7.29e-09 1.85e-06
Smp_151770.1 Smp_192780.1 0.94 1.30e-07 1.30e-05
Smp_194860.1 Smp_151770.1 0.96 7.54e-09 1.89e-06
Smp_151770.1 Smp_203090.1 0.92 5.67e-07 3.59e-05