Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_151220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_151220.1 0 1.28 1.74 -3.16 -3.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_151220.1 SmLINC00372-IBu 0.92 8.20e-07 4.45e-05
Smp_151220.1 SmLINC01316-IBu 0.90 2.90e-06 1.00e-04
Smp_151220.1 SmLINC02646-IBu 0.84 7.81e-05 1.10e-03
Smp_151220.1 SmLINC03395-IBu 0.84 7.11e-05 1.10e-03
Smp_151220.1 SmLINC04074-IBu 0.91 2.33e-06 9.36e-05
Smp_151220.1 SmLINC06490-IBu 0.85 4.83e-05 8.00e-04
Smp_151220.1 SmLINC06646-IBu 0.90 2.56e-06 1.00e-04
Smp_151220.1 SmLINC06836-IBu 0.87 2.46e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_151220.1 Smp_032120.1 0.91 1.65e-06 7.60e-05
Smp_036270.3 Smp_151220.1 0.92 8.91e-07 4.91e-05
Smp_151220.1 Smp_059340.3 0.96 7.74e-09 1.92e-06
Smp_059530.1 Smp_151220.1 0.95 5.17e-08 6.91e-06
Smp_090930.5 Smp_151220.1 0.90 4.18e-06 1.00e-04
Smp_103540.1 Smp_151220.1 0.91 1.34e-06 6.58e-05
Smp_159070.3 Smp_151220.1 0.91 1.26e-06 6.28e-05
Smp_168800.1 Smp_151220.1 0.95 4.14e-08 5.94e-06
Smp_200120.1 Smp_151220.1 0.91 1.56e-06 7.32e-05