Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_150970.1 Data

Correlation between Smp_150970.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_150970.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_150970.1 0 -9.47 1.16 2.59 2.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150970.1 SmLINC00484-IBu 0.80 2.00e-04 3.00e-03
Smp_150970.1 SmLINC00548-IBu 0.84 6.77e-05 1.00e-03
Smp_150970.1 SmLINC00769-IBu 0.81 1.00e-04 2.30e-03
Smp_150970.1 SmLINC01122-IBu 0.84 7.39e-05 1.10e-03
Smp_150970.1 SmLINC01139-IBu 0.82 1.00e-04 2.00e-03
Smp_150970.1 SmLINC01435-IBu 0.80 2.00e-04 2.80e-03
Smp_150970.1 SmLINC01538-IBu 0.84 7.53e-05 1.10e-03
Smp_150970.1 SmLINC01569-IBu 0.85 4.15e-05 7.00e-04
Smp_150970.1 SmLINC01733-IBu 0.83 1.00e-04 1.60e-03
Smp_150970.1 SmLINC01746-IBu 0.85 5.43e-05 9.00e-04
Smp_150970.1 SmLINC02657-IBu -0.80 2.00e-04 3.00e-03
Smp_150970.1 SmLINC03309-IBu 0.84 6.02e-05 9.00e-04
Smp_150970.1 SmLINC04345-IBu 0.82 1.00e-04 2.10e-03
Smp_150970.1 SmLINC04432-IBu 0.85 4.30e-05 7.00e-04
Smp_150970.1 SmLINC04475-IBu 0.88 8.91e-06 2.00e-04
Smp_150970.1 SmLINC04478-IBu 0.80 3.00e-04 3.40e-03
Smp_150970.1 SmLINC04637-IBu 0.81 2.00e-04 2.60e-03
Smp_150970.1 SmLINC04663-IBu 0.81 2.00e-04 2.50e-03
Smp_150970.1 SmLINC06010-IBu 0.85 3.94e-05 7.00e-04
Smp_150970.1 SmLINC06444-IBu 0.89 7.66e-06 2.00e-04
Smp_150970.1 SmLINC06449-IBu 0.83 1.00e-04 1.60e-03
Smp_150970.1 SmLINC06537-IBu 0.81 1.00e-04 2.30e-03
Smp_150970.1 SmLINC06543-IBu 0.80 3.00e-04 3.20e-03

Correlation between Smp_150970.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data