Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_150780.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_150780.1 0 -7.71 -2.20 2.44 1.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150780.1 SmLINC00369-IBu 0.85 4.51e-05 7.00e-04
Smp_150780.1 SmLINC00477-IBu 0.85 4.36e-05 7.00e-04
Smp_150780.1 SmLINC00484-IBu 0.90 3.45e-06 1.00e-04
Smp_150780.1 SmLINC00525-IBu 0.80 3.00e-04 3.30e-03
Smp_150780.1 SmLINC00548-IBu 0.86 2.67e-05 5.00e-04
Smp_150780.1 SmLINC00633-IBu 0.86 3.84e-05 7.00e-04
Smp_150780.1 SmLINC00769-IBu 0.86 3.32e-05 6.00e-04
Smp_150780.1 SmLINC01084-IBu 0.84 6.79e-05 1.00e-03
Smp_150780.1 SmLINC01122-IBu 0.93 4.16e-07 2.77e-05
Smp_150780.1 SmLINC01139-IBu 0.90 4.39e-06 1.00e-04
Smp_150780.1 SmLINC01431-IBu 0.83 1.00e-04 1.40e-03
Smp_150780.1 SmLINC01435-IBu 0.87 2.35e-05 4.00e-04
Smp_150780.1 SmLINC01538-IBu 0.92 8.57e-07 4.60e-05
Smp_150780.1 SmLINC01569-IBu 0.93 2.17e-07 1.75e-05
Smp_150780.1 SmLINC01733-IBu 0.92 1.04e-06 5.28e-05
Smp_150780.1 SmLINC01746-IBu 0.89 5.50e-06 1.00e-04
Smp_150780.1 SmLINC03309-IBu 0.90 3.16e-06 1.00e-04
Smp_150780.1 SmLINC03542-IBu 0.86 2.54e-05 5.00e-04
Smp_150780.1 SmLINC03693-IBu 0.85 5.96e-05 9.00e-04
Smp_150780.1 SmLINC04054-IBu 0.85 5.72e-05 9.00e-04
Smp_150780.1 SmLINC04345-IBu 0.89 6.13e-06 1.00e-04
Smp_150780.1 SmLINC04432-IBu 0.84 7.90e-05 1.10e-03
Smp_150780.1 SmLINC04475-IBu 0.83 1.00e-04 1.50e-03
Smp_150780.1 SmLINC04478-IBu 0.90 4.76e-06 1.00e-04
Smp_150780.1 SmLINC04521-IBu 0.92 1.09e-06 5.47e-05
Smp_150780.1 SmLINC04637-IBu 0.87 2.16e-05 4.00e-04
Smp_150780.1 SmLINC04663-IBu 0.91 1.25e-06 6.01e-05
Smp_150780.1 SmLINC04747-IBu 0.85 4.55e-05 7.00e-04
Smp_150780.1 SmLINC04769-IBu 0.80 3.00e-04 3.40e-03
Smp_150780.1 SmLINC05147-IBu 0.83 9.02e-05 1.30e-03
Smp_150780.1 SmLINC05171-IBu 0.82 1.00e-04 2.00e-03
Smp_150780.1 SmLINC05258-IBu 0.81 2.00e-04 2.40e-03
Smp_150780.1 SmLINC06010-IBu 0.86 2.87e-05 5.00e-04
Smp_150780.1 SmLINC06024-IBu 0.81 2.00e-04 2.70e-03
Smp_150780.1 SmLINC06221-IBu 0.85 5.64e-05 9.00e-04
Smp_150780.1 SmLINC06418-IBu 0.81 2.00e-04 2.40e-03
Smp_150780.1 SmLINC06444-IBu 0.91 1.57e-06 7.09e-05
Smp_150780.1 SmLINC06449-IBu 0.88 1.00e-05 2.00e-04
Smp_150780.1 SmLINC06537-IBu 0.92 7.05e-07 4.00e-05
Smp_150780.1 SmLINC06543-IBu 0.84 6.20e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_150780.1 0 -7.71 -2.20 2.44 1.91
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_150780.1 0.90 3.00e-06 1.00e-04
Smp_034980.2 Smp_150780.1 0.90 3.88e-06 1.00e-04
Smp_150780.1 Smp_131840.1 0.91 2.42e-06 9.95e-05
Smp_150980.2 Smp_150780.1 0.91 1.38e-06 6.71e-05
Smp_150780.1 Smp_154180.1 0.91 1.59e-06 7.41e-05
Smp_154190.1 Smp_150780.1 0.94 1.69e-07 1.55e-05
Smp_159070.2 Smp_150780.1 0.90 3.97e-06 1.00e-04
Smp_150780.1 Smp_164550.1 0.91 1.88e-06 8.35e-05
Smp_172480.1 Smp_150780.1 0.91 1.73e-06 7.85e-05
Smp_150780.1 Smp_205270.1 0.91 1.86e-06 8.29e-05