Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_150690.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150690.2 SmLINC02039-IBu 0.84 7.39e-05 1.10e-03
Smp_150690.2 SmLINC02888-IBu 0.82 1.00e-04 1.90e-03
Smp_150690.2 SmLINC06128-IBu 0.82 1.00e-04 1.70e-03
Smp_150690.2 SmLINC06892-IBu 0.94 9.36e-08 9.80e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150690.2 SmLINC06892-IBu 0.94 9.36e-08 1.03e-05
Smp_150690.2 Smp_004230.1 0.93 2.18e-07 1.85e-05
Smp_150690.2 Smp_005860.1 0.95 2.46e-08 4.17e-06
Smp_150690.2 Smp_005860.3 0.94 1.38e-07 1.35e-05
Smp_150690.2 Smp_009390.1 0.92 9.22e-07 5.04e-05
Smp_150690.2 Smp_018880.1 0.91 1.62e-06 7.51e-05
Smp_150690.2 Smp_022430.1 0.90 3.58e-06 1.00e-04
Smp_150690.2 Smp_028990.2 0.92 9.44e-07 5.12e-05
Smp_150690.2 Smp_033610.1 0.96 1.41e-08 2.88e-06
Smp_150690.2 Smp_036400.2 0.94 7.18e-08 8.63e-06
Smp_150690.2 Smp_037020.1 0.96 4.27e-09 1.30e-06
Smp_150690.2 Smp_038560.6 0.95 2.91e-08 4.68e-06
Smp_150690.2 Smp_042160.1 0.93 2.84e-07 2.22e-05
Smp_150690.2 Smp_046090.1 0.91 2.42e-06 9.96e-05
Smp_150690.2 Smp_059930.1 0.92 9.14e-07 5.01e-05
Smp_150690.2 Smp_061580.1 0.94 1.03e-07 1.11e-05
Smp_150690.2 Smp_061940.1 0.94 1.05e-07 1.11e-05
Smp_150690.2 Smp_066010.1 0.92 7.61e-07 4.40e-05
Smp_150690.2 Smp_074570.1 0.92 7.11e-07 4.20e-05
Smp_150690.2 Smp_085290.3 0.97 1.32e-09 6.11e-07
Smp_150690.2 Smp_097750.1 0.93 3.53e-07 2.58e-05
Smp_100790.1 Smp_150690.2 0.93 2.18e-07 1.85e-05
Smp_150690.2 Smp_105610.1 0.91 1.27e-06 6.32e-05
Smp_150690.2 Smp_106390.1 0.96 2.51e-09 9.22e-07
Smp_150690.2 Smp_108050.1 0.93 4.61e-07 3.10e-05
Smp_150690.2 Smp_110400.3 0.91 2.50e-06 1.00e-04
Smp_150690.2 Smp_113710.1 0.90 4.23e-06 1.00e-04
Smp_150690.2 Smp_113760.1 0.98 8.97e-11 1.08e-07
Smp_150690.2 Smp_114740.1 0.93 2.18e-07 1.85e-05
Smp_150690.2 Smp_120920.3 0.91 2.22e-06 9.38e-05
Smp_150690.2 Smp_145710.1 0.90 3.83e-06 1.00e-04
Smp_150690.2 Smp_145810.2 0.94 8.20e-08 9.45e-06
Smp_150690.2 Smp_148800.1 0.95 2.41e-08 4.12e-06
Smp_150690.2 Smp_149190.1 0.96 3.44e-09 1.13e-06
Smp_150690.2 Smp_154020.1 0.90 3.50e-06 1.00e-04
Smp_150690.2 Smp_154300.1 0.90 3.10e-06 1.00e-04
Smp_150690.2 Smp_157310.1 0.90 3.74e-06 1.00e-04
Smp_150690.2 Smp_165180.1 0.92 1.07e-06 5.61e-05
Smp_150690.2 Smp_178240.1 0.93 3.43e-07 2.53e-05
Smp_150690.2 Smp_182770.1 0.93 3.80e-07 2.72e-05
Smp_150690.2 Smp_184460.1 0.96 5.33e-09 1.50e-06
Smp_185180.1 Smp_150690.2 0.90 2.78e-06 1.00e-04
Smp_150690.2 Smp_185220.1 0.91 1.78e-06 8.03e-05
Smp_150690.2 Smp_185360.1 0.97 1.41e-09 6.36e-07
Smp_150690.2 Smp_188900.1 0.92 6.55e-07 3.96e-05
Smp_150690.2 Smp_190390.1 0.95 2.74e-08 4.49e-06
Smp_150690.2 Smp_190590.1 0.91 1.47e-06 7.01e-05
Smp_192880.1 Smp_150690.2 0.94 1.05e-07 1.11e-05
Smp_150690.2 Smp_194040.1 0.96 1.01e-08 2.30e-06
Smp_202700.1 Smp_150690.2 0.96 5.39e-09 1.51e-06
Smp_150690.2 Smp_205080.1 0.90 2.58e-06 1.00e-04