Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_150450.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150450.1 SmLINC00037-IBu 0.83 1.00e-04 1.40e-03
Smp_150450.1 SmLINC00133-IBu 0.84 8.25e-05 1.20e-03
Smp_150450.1 SmLINC00282-IBu 0.89 8.72e-06 2.00e-04
Smp_150450.1 SmLINC00784-IBu 0.86 2.70e-05 5.00e-04
Smp_150450.1 SmLINC01637-IBu 0.81 2.00e-04 2.50e-03
Smp_150450.1 SmLINC02255-IBu 0.89 8.37e-06 2.00e-04
Smp_150450.1 SmLINC02630-IBu 0.88 1.29e-05 3.00e-04
Smp_150450.1 SmLINC02657-IBu 0.85 5.72e-05 9.00e-04
Smp_150450.1 SmLINC03848-IBu 0.93 4.33e-07 2.84e-05
Smp_150450.1 SmLINC03930-IBu 0.87 2.02e-05 4.00e-04
Smp_150450.1 SmLINC04366-IBu 0.80 2.00e-04 2.80e-03
Smp_150450.1 SmLINC05284-IBu 0.88 1.08e-05 2.00e-04
Smp_150450.1 SmLINC05716-IBu 0.81 1.00e-04 2.20e-03
Smp_150450.1 SmLINC05720-IBu 0.86 3.49e-05 6.00e-04
Smp_150450.1 SmLINC05989-IBu 0.85 5.36e-05 8.00e-04
Smp_150450.1 SmLINC06128-IBu 0.86 3.11e-05 6.00e-04
Smp_150450.1 SmLINC06535-IBu 0.88 9.46e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_150450.1 Smp_001830.2 0.91 2.23e-06 9.39e-05
Smp_032970.1 Smp_150450.1 0.93 4.88e-07 3.23e-05
Smp_150450.1 Smp_036270.4 0.94 8.94e-08 1.00e-05
Smp_150450.1 Smp_051230.4 0.91 1.50e-06 7.10e-05
Smp_077690.1 Smp_150450.1 0.93 4.35e-07 2.98e-05
Smp_150450.1 Smp_112090.1 0.91 1.42e-06 6.85e-05
Smp_150450.1 Smp_168080.2 0.96 7.11e-09 1.82e-06
Smp_184760.1 Smp_150450.1 0.90 2.55e-06 1.00e-04
Smp_188900.1 Smp_150450.1 0.93 2.24e-07 1.88e-05
Smp_150450.1 Smp_195070.1 0.96 1.20e-08 2.58e-06