Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_149990.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
Smp_149990.2 0 8.45 0.00 9.97 8.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149990.2 SmLINC02581-IBu 0.85 4.52e-05 7.00e-04
Smp_149990.2 SmLINC03236-IBu 0.85 4.27e-05 7.00e-04
Smp_149990.2 SmLINC04481-IBu 0.85 4.29e-05 7.00e-04
Smp_149990.2 SmLINC05009-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_141480.1 0 7.59 4.1 10.61 8.33
Smp_149990.2 0 8.45 0.0 9.97 8.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141480.1 Smp_149990.2 0.95 3.88e-08 5.69e-06