Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_149490.1 Data

Correlation between Smp_149490.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_149490.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_149490.1 0 0.92 1.54 2.36 4.88

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149490.1 SmLINC00001-IBu 0.82 1.00e-04 2.00e-03
Smp_149490.1 SmLINC00004-IBu 0.83 1.00e-04 1.40e-03
Smp_149490.1 SmLINC01520-IBu 0.88 1.10e-05 2.00e-04
Smp_149490.1 SmLINC02029-IBu 0.92 5.34e-07 3.29e-05
Smp_149490.1 SmLINC02376-IBu 0.85 4.87e-05 8.00e-04
Smp_149490.1 SmLINC02539-IBu 0.84 6.26e-05 1.00e-03
Smp_149490.1 SmLINC02577-IBu 0.86 3.10e-05 6.00e-04
Smp_149490.1 SmLINC02783-IBu 0.86 3.20e-05 6.00e-04
Smp_149490.1 SmLINC02786-IBu 0.91 1.55e-06 7.03e-05
Smp_149490.1 SmLINC03658-IBu 0.91 1.24e-06 6.00e-05
Smp_149490.1 SmLINC04235-IBu 0.93 2.39e-07 1.88e-05
Smp_149490.1 SmLINC04421-IBu 0.80 2.00e-04 3.00e-03
Smp_149490.1 SmLINC04627-IBu 0.83 1.00e-04 1.60e-03
Smp_149490.1 SmLINC04896-IBu 0.94 1.37e-07 1.28e-05
Smp_149490.1 SmLINC05404-IBu 0.94 1.81e-07 1.55e-05
Smp_149490.1 SmLINC05604-IBu 0.87 1.77e-05 4.00e-04
Smp_149490.1 SmLINC05684-IBu 0.91 2.46e-06 9.75e-05
Smp_149490.1 SmLINC06239-IBu 0.93 3.85e-07 2.62e-05

Correlation between Smp_149490.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_149490.1 0 0.92 1.54 2.36 4.88
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 Smp_149490.1 0.90 3.94e-06 1.00e-04
Smp_041540.1 Smp_149490.1 0.95 5.81e-08 7.48e-06
Smp_070540.1 Smp_149490.1 0.91 1.32e-06 6.52e-05
Smp_089270.1 Smp_149490.1 0.93 2.02e-07 1.75e-05
Smp_105450.1 Smp_149490.1 0.90 3.23e-06 1.00e-04
Smp_149490.1 Smp_105450.2 0.92 6.55e-07 3.96e-05
Smp_149490.1 Smp_130100.1 0.92 1.20e-06 6.06e-05
Smp_130970.1 Smp_149490.1 0.90 4.07e-06 1.00e-04
Smp_137460.1 Smp_149490.1 0.95 3.79e-08 5.59e-06
Smp_138360.1 Smp_149490.1 0.91 1.35e-06 6.62e-05
Smp_139160.1 Smp_149490.1 0.91 1.63e-06 7.55e-05
Smp_140720.1 Smp_149490.1 0.91 1.73e-06 7.87e-05
Smp_152150.1 Smp_149490.1 0.96 3.07e-09 1.05e-06
Smp_164400.1 Smp_149490.1 0.96 1.06e-08 2.38e-06
Smp_167830.1 Smp_149490.1 0.93 3.77e-07 2.70e-05
Smp_170840.1 Smp_149490.1 0.95 5.80e-08 7.46e-06
Smp_181070.1 Smp_149490.1 0.92 6.48e-07 3.93e-05
Smp_149490.1 Smp_194910.1 0.90 4.73e-06 1.00e-04
Smp_203030.1 Smp_149490.1 0.91 2.48e-06 1.00e-04