Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_149390.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_149390.1 0 -0.41 3.17 4.26 3.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149390.1 SmLINC00769-IBu 0.81 2.00e-04 2.00e-03
Smp_149390.1 SmLINC01637-IBu -0.60 1.65e-02 5.00e-02
Smp_149390.1 SmLINC04271-IBu -0.51 4.84e-02 1.09e-01
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_149390.1 0 -0.41 3.17 4.26 3.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149390.1 SmLINC00477-IBu 0.88 1.21e-05 3.00e-04
Smp_149390.1 SmLINC00484-IBu 0.87 1.63e-05 3.00e-04
Smp_149390.1 SmLINC00769-IBu 0.81 2.00e-04 2.50e-03
Smp_149390.1 SmLINC01066-IBu 0.86 3.84e-05 7.00e-04
Smp_149390.1 SmLINC01139-IBu 0.81 1.00e-04 2.20e-03
Smp_149390.1 SmLINC01433-IBu 0.85 4.99e-05 8.00e-04
Smp_149390.1 SmLINC01435-IBu 0.82 1.00e-04 1.70e-03
Smp_149390.1 SmLINC01538-IBu 0.80 3.00e-04 3.10e-03
Smp_149390.1 SmLINC01746-IBu 0.83 8.98e-05 1.30e-03
Smp_149390.1 SmLINC01822-IBu 0.86 2.99e-05 5.00e-04
Smp_149390.1 SmLINC03309-IBu 0.84 6.62e-05 1.00e-03
Smp_149390.1 SmLINC03542-IBu 0.85 4.63e-05 8.00e-04
Smp_149390.1 SmLINC03693-IBu 0.85 4.73e-05 8.00e-04
Smp_149390.1 SmLINC04054-IBu 0.87 1.52e-05 3.00e-04
Smp_149390.1 SmLINC04345-IBu 0.85 4.22e-05 7.00e-04
Smp_149390.1 SmLINC04432-IBu 0.84 8.55e-05 1.20e-03
Smp_149390.1 SmLINC04475-IBu 0.91 2.33e-06 9.36e-05
Smp_149390.1 SmLINC04663-IBu 0.83 9.41e-05 1.30e-03
Smp_149390.1 SmLINC04747-IBu 0.85 4.04e-05 7.00e-04
Smp_149390.1 SmLINC04769-IBu 0.92 7.87e-07 4.33e-05
Smp_149390.1 SmLINC05009-IBu 0.86 2.82e-05 5.00e-04
Smp_149390.1 SmLINC05171-IBu 0.88 1.23e-05 3.00e-04
Smp_149390.1 SmLINC05632-IBu 0.88 1.23e-05 3.00e-04
Smp_149390.1 SmLINC05870-IBu 0.93 5.15e-07 3.21e-05
Smp_149390.1 SmLINC06007-IBu 0.87 2.47e-05 5.00e-04
Smp_149390.1 SmLINC06010-IBu 0.82 1.00e-04 1.90e-03
Smp_149390.1 SmLINC06221-IBu 0.89 7.23e-06 2.00e-04
Smp_149390.1 SmLINC06418-IBu 0.83 9.07e-05 1.30e-03
Smp_149390.1 SmLINC06444-IBu 0.83 1.00e-04 1.40e-03
Smp_149390.1 SmLINC06449-IBu 0.85 5.88e-05 9.00e-04
Smp_149390.1 SmLINC06536-IBu 0.85 4.09e-05 7.00e-04
Smp_149390.1 SmLINC06538-IBu 0.81 1.00e-04 2.20e-03
Smp_149390.1 SmLINC06543-IBu 0.86 3.09e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_149390.1 0 -0.41 3.17 4.26 3.00
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_045200.1 Smp_149390.1 0.91 2.26e-06 9.50e-05
Smp_118560.1 Smp_149390.1 0.92 9.81e-07 5.26e-05
Smp_149390.1 Smp_125200.1 0.91 2.12e-06 9.07e-05
Smp_129110.1 Smp_149390.1 0.93 3.09e-07 2.35e-05
Smp_163940.1 Smp_149390.1 0.94 1.54e-07 1.45e-05
Smp_149390.1 Smp_175020.1 0.93 2.99e-07 2.30e-05
Smp_194980.1 Smp_149390.1 0.91 2.35e-06 9.77e-05
Smp_200750.1 Smp_149390.1 0.90 3.32e-06 1.00e-04