Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_149220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_149220.1 0 0.14 0.72 -3.31 -3.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149220.1 SmLINC00372-IBu 0.89 5.17e-06 1.00e-04
Smp_149220.1 SmLINC00525-IBu -0.81 2.00e-04 2.70e-03
Smp_149220.1 SmLINC01316-IBu 0.90 3.01e-06 1.00e-04
Smp_149220.1 SmLINC02026-IBu 0.81 2.00e-04 2.70e-03
Smp_149220.1 SmLINC02646-IBu 0.86 2.58e-05 5.00e-04
Smp_149220.1 SmLINC04074-IBu 0.80 2.00e-04 3.00e-03
Smp_149220.1 SmLINC04430-IBu 0.82 1.00e-04 1.90e-03
Smp_149220.1 SmLINC05559-IBu 0.81 2.00e-04 2.40e-03
Smp_149220.1 SmLINC06024-IBu -0.83 1.00e-04 1.60e-03
Smp_149220.1 SmLINC06489-IBu 0.81 2.00e-04 2.60e-03
Smp_149220.1 SmLINC06490-IBu 0.96 1.33e-08 2.59e-06
Smp_149220.1 SmLINC06646-IBu 0.82 1.00e-04 1.80e-03
Smp_149220.1 SmLINC06700-IBu 0.84 6.24e-05 1.00e-03
Smp_149220.1 SmLINC06836-IBu 0.84 6.68e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149220.1 Smp_032120.1 0.90 3.81e-06 1.00e-04
Smp_149220.1 Smp_036270.3 0.90 3.82e-06 1.00e-04
Smp_149220.1 Smp_059340.3 0.90 3.54e-06 1.00e-04
Smp_090930.5 Smp_149220.1 0.91 2.36e-06 9.77e-05
Smp_098890.1 Smp_149220.1 0.92 8.10e-07 4.60e-05
Smp_159070.3 Smp_149220.1 0.90 4.37e-06 1.00e-04
Smp_149220.1 Smp_168800.1 0.96 2.71e-09 9.69e-07
Smp_194060.1 Smp_149220.1 0.91 1.29e-06 6.41e-05
Smp_200120.1 Smp_149220.1 0.97 9.87e-10 5.05e-07
Smp_205060.1 Smp_149220.1 0.93 4.87e-07 3.22e-05