Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_149200.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149200.1 SmLINC01431-IBu -0.91 2.49e-06 7.08e-05
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149200.1 SmLINC00001-IBu -0.88 1.02e-05 2.00e-04
Smp_149200.1 SmLINC00004-IBu -0.90 4.31e-06 1.00e-04
Smp_149200.1 SmLINC00266-IBu -0.81 2.00e-04 2.70e-03
Smp_149200.1 SmLINC00294-IBu 0.84 6.83e-05 1.00e-03
Smp_149200.1 SmLINC00369-IBu -0.88 1.42e-05 3.00e-04
Smp_149200.1 SmLINC00525-IBu -0.87 1.90e-05 4.00e-04
Smp_149200.1 SmLINC00554-IBu 0.81 2.00e-04 2.70e-03
Smp_149200.1 SmLINC00556-IBu 0.88 1.44e-05 3.00e-04
Smp_149200.1 SmLINC00633-IBu -0.81 2.00e-04 2.60e-03
Smp_149200.1 SmLINC01084-IBu -0.91 1.74e-06 7.62e-05
Smp_149200.1 SmLINC01122-IBu -0.84 8.85e-05 1.20e-03
Smp_149200.1 SmLINC01431-IBu -0.91 2.49e-06 9.82e-05
Smp_149200.1 SmLINC01432-IBu -0.84 7.11e-05 1.10e-03
Smp_149200.1 SmLINC01538-IBu -0.80 3.00e-04 3.20e-03
Smp_149200.1 SmLINC01569-IBu -0.83 9.77e-05 1.30e-03
Smp_149200.1 SmLINC01733-IBu -0.82 1.00e-04 1.70e-03
Smp_149200.1 SmLINC02084-IBu -0.88 1.39e-05 3.00e-04
Smp_149200.1 SmLINC02255-IBu 0.86 3.75e-05 6.00e-04
Smp_149200.1 SmLINC02394-IBu -0.86 3.52e-05 6.00e-04
Smp_149200.1 SmLINC02539-IBu -0.83 1.00e-04 1.50e-03
Smp_149200.1 SmLINC02546-IBu -0.84 6.21e-05 9.00e-04
Smp_149200.1 SmLINC02630-IBu 0.80 2.00e-04 3.00e-03
Smp_149200.1 SmLINC02657-IBu 0.84 6.88e-05 1.00e-03
Smp_149200.1 SmLINC03849-IBu 0.93 2.35e-07 1.85e-05
Smp_149200.1 SmLINC03927-IBu -0.85 4.24e-05 7.00e-04
Smp_149200.1 SmLINC04271-IBu 0.80 2.00e-04 2.80e-03
Smp_149200.1 SmLINC04421-IBu -0.89 5.64e-06 1.00e-04
Smp_149200.1 SmLINC04423-IBu -0.86 2.83e-05 5.00e-04
Smp_149200.1 SmLINC04478-IBu -0.83 1.00e-04 1.40e-03
Smp_149200.1 SmLINC04521-IBu -0.84 7.87e-05 1.10e-03
Smp_149200.1 SmLINC05147-IBu -0.84 7.47e-05 1.10e-03
Smp_149200.1 SmLINC05274-IBu 0.85 5.09e-05 8.00e-04
Smp_149200.1 SmLINC05284-IBu 0.82 1.00e-04 2.00e-03
Smp_149200.1 SmLINC05289-IBu -0.87 2.01e-05 4.00e-04
Smp_149200.1 SmLINC05604-IBu -0.88 1.17e-05 2.00e-04
Smp_149200.1 SmLINC06024-IBu -0.90 3.87e-06 1.00e-04
Smp_149200.1 SmLINC06415-IBu -0.80 2.00e-04 2.80e-03
Smp_149200.1 SmLINC06535-IBu 0.85 5.51e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 Smp_149200.1 -0.90 4.10e-06 1.00e-04
Smp_033260.1 Smp_149200.1 -0.92 5.25e-07 3.39e-05
Smp_149200.1 Smp_040970.2 -0.90 3.17e-06 1.00e-04
Smp_050350.3 Smp_149200.1 -0.92 5.59e-07 3.55e-05
Smp_149200.1 Smp_052280.2 -0.96 1.16e-08 2.53e-06
Smp_056460.1 Smp_149200.1 -0.92 9.31e-07 5.07e-05
Smp_149200.1 Smp_079420.1 -0.90 2.52e-06 1.00e-04
Smp_094050.1 Smp_149200.1 -0.92 8.14e-07 4.62e-05
Smp_169670.1 Smp_149200.1 -0.91 1.25e-06 6.27e-05
Smp_149200.1 Smp_192780.1 -0.91 2.19e-06 9.28e-05
Smp_194860.1 Smp_149200.1 -0.91 1.92e-06 8.47e-05
Smp_203800.1 Smp_149200.1 0.90 3.21e-06 1.00e-04