Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_149190.1 Data

Correlation between Smp_149190.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_149190.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149190.1 SmLINC02039-IBu 0.84 8.18e-05 1.20e-03
Smp_149190.1 SmLINC06892-IBu 0.97 7.68e-10 3.98e-07

Correlation between Smp_149190.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_149190.1 Smp_009650.2 0.97 1.77e-09 7.36e-07
Smp_036400.2 Smp_149190.1 0.97 3.22e-10 2.47e-07
Smp_149190.1 Smp_066010.1 0.95 3.86e-08 5.67e-06
Smp_149190.1 Smp_085290.3 0.93 2.57e-07 2.07e-05
Smp_106390.1 Smp_149190.1 0.93 4.44e-07 3.02e-05
Smp_149190.1 Smp_133770.1 0.90 3.66e-06 1.00e-04
Smp_150690.2 Smp_149190.1 0.96 3.44e-09 1.13e-06
Smp_149190.1 Smp_153240.1 0.90 2.94e-06 1.00e-04
Smp_149190.1 Smp_178240.1 0.94 1.05e-07 1.12e-05
Smp_149190.1 Smp_184460.1 0.95 1.99e-08 3.63e-06
Smp_149190.1 Smp_185360.1 0.95 5.52e-08 7.22e-06