Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_148640.1 Data

Correlation between Smp_148640.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_148640.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_148640.1 0 0.05 6.07 6.14 5.86

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_148640.1 SmLINC00477-IBu 0.86 2.53e-05 5.00e-04
Smp_148640.1 SmLINC00484-IBu 0.87 1.67e-05 3.00e-04
Smp_148640.1 SmLINC00548-IBu 0.86 3.67e-05 6.00e-04
Smp_148640.1 SmLINC00554-IBu -0.81 2.00e-04 2.40e-03
Smp_148640.1 SmLINC00633-IBu 0.85 5.54e-05 9.00e-04
Smp_148640.1 SmLINC00769-IBu 0.81 2.00e-04 2.50e-03
Smp_148640.1 SmLINC01066-IBu 0.83 9.83e-05 1.30e-03
Smp_148640.1 SmLINC01139-IBu 0.86 2.52e-05 5.00e-04
Smp_148640.1 SmLINC01433-IBu 0.82 1.00e-04 1.90e-03
Smp_148640.1 SmLINC01435-IBu 0.86 2.87e-05 5.00e-04
Smp_148640.1 SmLINC01538-IBu 0.87 1.59e-05 3.00e-04
Smp_148640.1 SmLINC01569-IBu 0.83 1.00e-04 1.50e-03
Smp_148640.1 SmLINC01733-IBu 0.84 6.96e-05 1.00e-03
Smp_148640.1 SmLINC01746-IBu 0.85 4.70e-05 8.00e-04
Smp_148640.1 SmLINC01822-IBu 0.80 2.00e-04 2.90e-03
Smp_148640.1 SmLINC03309-IBu 0.89 6.73e-06 2.00e-04
Smp_148640.1 SmLINC03542-IBu 0.84 6.89e-05 1.00e-03
Smp_148640.1 SmLINC03693-IBu 0.88 1.51e-05 3.00e-04
Smp_148640.1 SmLINC04054-IBu 0.83 9.27e-05 1.30e-03
Smp_148640.1 SmLINC04345-IBu 0.83 1.00e-04 1.40e-03
Smp_148640.1 SmLINC04432-IBu 0.90 4.71e-06 1.00e-04
Smp_148640.1 SmLINC04475-IBu 0.90 3.84e-06 1.00e-04
Smp_148640.1 SmLINC04521-IBu 0.82 1.00e-04 2.00e-03
Smp_148640.1 SmLINC04663-IBu 0.85 5.36e-05 8.00e-04
Smp_148640.1 SmLINC04747-IBu 0.81 1.00e-04 2.20e-03
Smp_148640.1 SmLINC04769-IBu 0.86 2.56e-05 5.00e-04
Smp_148640.1 SmLINC05147-IBu 0.87 2.19e-05 4.00e-04
Smp_148640.1 SmLINC05171-IBu 0.84 6.38e-05 1.00e-03
Smp_148640.1 SmLINC05632-IBu 0.83 1.00e-04 1.50e-03
Smp_148640.1 SmLINC05870-IBu 0.91 2.24e-06 9.10e-05
Smp_148640.1 SmLINC06010-IBu 0.85 4.08e-05 7.00e-04
Smp_148640.1 SmLINC06221-IBu 0.89 5.34e-06 1.00e-04
Smp_148640.1 SmLINC06444-IBu 0.87 2.17e-05 4.00e-04
Smp_148640.1 SmLINC06449-IBu 0.87 2.31e-05 4.00e-04
Smp_148640.1 SmLINC06536-IBu 0.86 2.67e-05 5.00e-04
Smp_148640.1 SmLINC06543-IBu 0.87 1.92e-05 4.00e-04

Correlation between Smp_148640.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_148640.1 0 0.05 6.07 6.14 5.86

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_045200.1 Smp_148640.1 0.92 7.17e-07 4.22e-05
Smp_125200.1 Smp_148640.1 0.90 4.54e-06 1.00e-04
Smp_129110.1 Smp_148640.1 0.91 2.03e-06 8.80e-05