Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_147090.1 Data

Correlation between Smp_147090.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_147090.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_147090.1 0 -1.07 -2.38 -5.49 -4.74

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_147090.1 SmLINC00001-IBu -0.84 7.42e-05 1.10e-03
Smp_147090.1 SmLINC00004-IBu -0.85 5.90e-05 9.00e-04
Smp_147090.1 SmLINC00282-IBu 0.81 2.00e-04 2.60e-03
Smp_147090.1 SmLINC00369-IBu -0.86 3.06e-05 5.00e-04
Smp_147090.1 SmLINC00525-IBu -0.80 2.00e-04 2.80e-03
Smp_147090.1 SmLINC00556-IBu 0.86 3.76e-05 6.00e-04
Smp_147090.1 SmLINC00633-IBu -0.80 2.00e-04 2.90e-03
Smp_147090.1 SmLINC01084-IBu -0.86 3.74e-05 6.00e-04
Smp_147090.1 SmLINC01122-IBu -0.82 1.00e-04 2.00e-03
Smp_147090.1 SmLINC01431-IBu -0.88 1.42e-05 3.00e-04
Smp_147090.1 SmLINC01432-IBu -0.85 4.30e-05 7.00e-04
Smp_147090.1 SmLINC01569-IBu -0.81 1.00e-04 2.20e-03
Smp_147090.1 SmLINC01637-IBu 0.80 2.00e-04 3.00e-03
Smp_147090.1 SmLINC01733-IBu -0.83 1.00e-04 1.60e-03
Smp_147090.1 SmLINC02084-IBu -0.85 3.94e-05 7.00e-04
Smp_147090.1 SmLINC02255-IBu 0.92 6.28e-07 3.69e-05
Smp_147090.1 SmLINC02394-IBu -0.81 2.00e-04 2.30e-03
Smp_147090.1 SmLINC02546-IBu -0.81 2.00e-04 2.40e-03
Smp_147090.1 SmLINC02630-IBu 0.91 1.62e-06 7.24e-05
Smp_147090.1 SmLINC02657-IBu 0.88 1.02e-05 2.00e-04
Smp_147090.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_147090.1 SmLINC03849-IBu 0.80 2.00e-04 2.90e-03
Smp_147090.1 SmLINC03927-IBu -0.83 1.00e-04 1.60e-03
Smp_147090.1 SmLINC04421-IBu -0.87 1.90e-05 4.00e-04
Smp_147090.1 SmLINC04423-IBu -0.82 1.00e-04 1.90e-03
Smp_147090.1 SmLINC04478-IBu -0.81 2.00e-04 2.60e-03
Smp_147090.1 SmLINC04521-IBu -0.83 1.00e-04 1.50e-03
Smp_147090.1 SmLINC05147-IBu -0.83 1.00e-04 1.50e-03
Smp_147090.1 SmLINC05274-IBu 0.86 3.25e-05 6.00e-04
Smp_147090.1 SmLINC05284-IBu 0.88 9.47e-06 2.00e-04
Smp_147090.1 SmLINC05289-IBu -0.83 1.00e-04 1.50e-03
Smp_147090.1 SmLINC05604-IBu -0.84 8.27e-05 1.20e-03
Smp_147090.1 SmLINC05989-IBu 0.83 1.00e-04 1.60e-03
Smp_147090.1 SmLINC06024-IBu -0.82 1.00e-04 1.70e-03
Smp_147090.1 SmLINC06128-IBu 0.85 5.75e-05 9.00e-04
Smp_147090.1 SmLINC06221-IBu -0.80 2.00e-04 3.10e-03
Smp_147090.1 SmLINC06535-IBu 0.90 2.69e-06 1.00e-04
Smp_147090.1 SmLINC06903-IBu 0.80 2.00e-04 2.70e-03

Correlation between Smp_147090.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_147090.1 0 -1.07 -2.38 -5.49 -4.74
Smp_169670.1 0 0.00 8.19 10.09 10.85

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_147090.1 Smp_035090.2 0.93 2.01e-07 1.75e-05
Smp_050350.3 Smp_147090.1 -0.90 2.59e-06 1.00e-04
Smp_052280.2 Smp_147090.1 -0.91 1.20e-06 6.08e-05
Smp_055340.2 Smp_147090.1 -0.94 6.59e-08 8.15e-06
Smp_169670.1 Smp_147090.1 -0.93 2.04e-07 1.77e-05