Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_147060.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
Smp_147060.1 0 -1.31 -4.53 0.94 2.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_147060.1 SmLINC04235-IBu 0.90 2.87e-06 7.88e-05
Smp_147060.1 SmLINC04237-IBu 0.78 5.00e-04 3.70e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_147060.1 0 -1.31 -4.53 0.94 2.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_147060.1 SmLINC00001-IBu 0.94 1.38e-07 1.28e-05
Smp_147060.1 SmLINC00004-IBu 0.93 2.78e-07 2.09e-05
Smp_147060.1 SmLINC00525-IBu 0.80 3.00e-04 3.30e-03
Smp_147060.1 SmLINC01084-IBu 0.82 1.00e-04 2.10e-03
Smp_147060.1 SmLINC01431-IBu 0.82 1.00e-04 2.00e-03
Smp_147060.1 SmLINC01520-IBu 0.86 3.72e-05 6.00e-04
Smp_147060.1 SmLINC02029-IBu 0.85 5.78e-05 9.00e-04
Smp_147060.1 SmLINC02376-IBu 0.87 2.11e-05 4.00e-04
Smp_147060.1 SmLINC02394-IBu 0.91 2.39e-06 9.55e-05
Smp_147060.1 SmLINC02539-IBu 0.89 6.40e-06 1.00e-04
Smp_147060.1 SmLINC02540-IBu 0.85 5.59e-05 9.00e-04
Smp_147060.1 SmLINC02577-IBu 0.88 1.13e-05 2.00e-04
Smp_147060.1 SmLINC02783-IBu 0.85 5.27e-05 8.00e-04
Smp_147060.1 SmLINC03326-IBu 0.89 5.69e-06 1.00e-04
Smp_147060.1 SmLINC04235-IBu 0.90 2.87e-06 1.00e-04
Smp_147060.1 SmLINC04421-IBu 0.84 7.29e-05 1.10e-03
Smp_147060.1 SmLINC04423-IBu 0.85 4.39e-05 7.00e-04
Smp_147060.1 SmLINC04627-IBu 0.87 2.30e-05 4.00e-04
Smp_147060.1 SmLINC05289-IBu 0.89 6.01e-06 1.00e-04
Smp_147060.1 SmLINC05404-IBu 0.81 2.00e-04 2.50e-03
Smp_147060.1 SmLINC05604-IBu 0.88 1.47e-05 3.00e-04
Smp_147060.1 SmLINC05684-IBu 0.86 3.86e-05 7.00e-04
Smp_147060.1 SmLINC06024-IBu 0.86 2.58e-05 5.00e-04
Smp_147060.1 SmLINC06239-IBu 0.83 9.80e-05 1.30e-03
Smp_147060.1 SmLINC06490-IBu -0.86 3.75e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_147060.1 0 -1.31 -4.53 0.94 2.50
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 Smp_147060.1 0.92 5.32e-07 3.43e-05
Smp_147060.1 Smp_024180.1 0.91 2.23e-06 9.41e-05
Smp_024180.2 Smp_147060.1 0.92 1.04e-06 5.49e-05
Smp_147060.1 Smp_028870.1 0.93 2.43e-07 1.99e-05
Smp_038870.2 Smp_147060.1 0.90 4.49e-06 1.00e-04
Smp_085180.1 Smp_147060.1 0.92 8.46e-07 4.74e-05
Smp_147060.1 Smp_102780.1 0.92 5.66e-07 3.58e-05
Smp_147060.1 Smp_123880.1 0.90 3.73e-06 1.00e-04
Smp_147060.1 Smp_130100.1 0.91 1.30e-06 6.43e-05
Smp_147060.1 Smp_131410.1 0.90 3.69e-06 1.00e-04
Smp_147060.1 Smp_131490.1 0.94 1.33e-07 1.31e-05
Smp_137720.1 Smp_147060.1 0.91 2.21e-06 9.35e-05
Smp_147060.1 Smp_140720.1 0.90 4.19e-06 1.00e-04
Smp_147060.1 Smp_155570.1 0.92 5.28e-07 3.41e-05
Smp_159650.1 Smp_147060.1 0.92 6.80e-07 4.07e-05
Smp_162320.1 Smp_147060.1 0.91 2.41e-06 9.93e-05
Smp_147060.1 Smp_164320.1 0.91 1.76e-06 7.95e-05
Smp_147060.1 Smp_202610.1 0.93 2.64e-07 2.11e-05
Smp_147060.1 Smp_203030.1 0.92 6.00e-07 3.73e-05