Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_146810.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_146810.1 0 0.41 0.21 2.10 6.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_146810.1 SmLINC00001-IBu 0.80 2.00e-04 2.80e-03
Smp_146810.1 SmLINC00004-IBu 0.82 1.00e-04 2.10e-03
Smp_146810.1 SmLINC01520-IBu 0.87 2.37e-05 4.00e-04
Smp_146810.1 SmLINC02029-IBu 0.91 1.75e-06 7.64e-05
Smp_146810.1 SmLINC02376-IBu 0.86 2.74e-05 5.00e-04
Smp_146810.1 SmLINC02539-IBu 0.82 1.00e-04 1.80e-03
Smp_146810.1 SmLINC02577-IBu 0.85 3.99e-05 7.00e-04
Smp_146810.1 SmLINC02783-IBu 0.87 1.65e-05 3.00e-04
Smp_146810.1 SmLINC02786-IBu 0.92 7.31e-07 4.11e-05
Smp_146810.1 SmLINC03658-IBu 0.89 5.11e-06 1.00e-04
Smp_146810.1 SmLINC04235-IBu 0.95 4.05e-08 5.53e-06
Smp_146810.1 SmLINC04627-IBu 0.86 3.61e-05 6.00e-04
Smp_146810.1 SmLINC04896-IBu 0.93 4.98e-07 3.13e-05
Smp_146810.1 SmLINC05404-IBu 0.95 2.40e-08 3.86e-06
Smp_146810.1 SmLINC05604-IBu 0.82 1.00e-04 1.80e-03
Smp_146810.1 SmLINC05684-IBu 0.91 1.31e-06 6.23e-05
Smp_146810.1 SmLINC06239-IBu 0.96 4.09e-09 1.18e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_146810.1 0.91 1.28e-06 6.36e-05
Smp_004420.3 Smp_146810.1 0.90 2.99e-06 1.00e-04
Smp_041540.1 Smp_146810.1 0.95 3.11e-08 4.89e-06
Smp_146810.1 Smp_070540.1 0.91 1.49e-06 7.09e-05
Smp_089270.1 Smp_146810.1 0.92 5.30e-07 3.42e-05
Smp_105450.1 Smp_146810.1 0.92 9.04e-07 4.97e-05
Smp_146810.1 Smp_105450.2 0.94 1.22e-07 1.24e-05
Smp_126340.1 Smp_146810.1 0.90 4.40e-06 1.00e-04
Smp_146810.1 Smp_130100.1 0.92 8.41e-07 4.72e-05
Smp_130970.1 Smp_146810.1 0.96 1.24e-08 2.64e-06
Smp_136730.1 Smp_146810.1 0.90 4.08e-06 1.00e-04
Smp_137460.1 Smp_146810.1 0.98 7.13e-12 2.22e-08
Smp_137700.1 Smp_146810.1 0.92 6.49e-07 3.94e-05
Smp_138360.1 Smp_146810.1 0.96 5.33e-09 1.50e-06
Smp_139160.1 Smp_146810.1 0.92 8.04e-07 4.58e-05
Smp_152150.1 Smp_146810.1 0.99 1.62e-13 2.16e-09
Smp_164400.1 Smp_146810.1 0.98 1.87e-11 4.05e-08
Smp_167830.1 Smp_146810.1 0.92 8.58e-07 4.79e-05
Smp_170840.1 Smp_146810.1 0.94 7.77e-08 9.11e-06
Smp_181070.1 Smp_146810.1 0.94 1.77e-07 1.60e-05
Smp_146810.1 Smp_194910.1 0.90 2.60e-06 1.00e-04
Smp_203030.1 Smp_146810.1 0.90 3.23e-06 1.00e-04