Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_146740.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_146740.1 0 1.66 1.14 4.91 6.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_146740.1 SmLINC04271-IBu -0.64 9.80e-03 3.42e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_146740.1 0 1.66 1.14 4.91 6.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_146740.1 SmLINC00001-IBu 0.88 8.98e-06 2.00e-04
Smp_146740.1 SmLINC00004-IBu 0.89 5.39e-06 1.00e-04
Smp_146740.1 SmLINC00007-IBu 0.91 1.71e-06 7.52e-05
Smp_146740.1 SmLINC00266-IBu 0.95 2.36e-08 3.82e-06
Smp_146740.1 SmLINC00369-IBu 0.82 1.00e-04 2.00e-03
Smp_146740.1 SmLINC00376-IBu 0.85 5.83e-05 9.00e-04
Smp_146740.1 SmLINC00525-IBu 0.84 7.28e-05 1.10e-03
Smp_146740.1 SmLINC01084-IBu 0.86 3.56e-05 6.00e-04
Smp_146740.1 SmLINC01431-IBu 0.86 2.52e-05 5.00e-04
Smp_146740.1 SmLINC01520-IBu 0.91 2.39e-06 9.55e-05
Smp_146740.1 SmLINC02029-IBu 0.83 1.00e-04 1.60e-03
Smp_146740.1 SmLINC02084-IBu 0.91 1.24e-06 6.00e-05
Smp_146740.1 SmLINC02394-IBu 0.87 1.68e-05 3.00e-04
Smp_146740.1 SmLINC02539-IBu 0.93 3.92e-07 2.65e-05
Smp_146740.1 SmLINC02540-IBu 0.93 2.61e-07 1.99e-05
Smp_146740.1 SmLINC02545-IBu 0.86 3.01e-05 5.00e-04
Smp_146740.1 SmLINC02546-IBu 0.87 2.04e-05 4.00e-04
Smp_146740.1 SmLINC02577-IBu 0.91 1.38e-06 6.48e-05
Smp_146740.1 SmLINC02776-IBu 0.86 3.23e-05 6.00e-04
Smp_146740.1 SmLINC02783-IBu 0.85 3.97e-05 7.00e-04
Smp_146740.1 SmLINC03108-IBu 0.87 1.58e-05 3.00e-04
Smp_146740.1 SmLINC03326-IBu 0.90 4.74e-06 1.00e-04
Smp_146740.1 SmLINC03927-IBu 0.89 6.11e-06 1.00e-04
Smp_146740.1 SmLINC04237-IBu 0.81 2.00e-04 2.40e-03
Smp_146740.1 SmLINC04421-IBu 0.87 2.35e-05 4.00e-04
Smp_146740.1 SmLINC04684-IBu 0.81 1.00e-04 2.20e-03
Smp_146740.1 SmLINC05289-IBu 0.86 2.91e-05 5.00e-04
Smp_146740.1 SmLINC05404-IBu 0.81 2.00e-04 2.40e-03
Smp_146740.1 SmLINC05604-IBu 0.87 1.51e-05 3.00e-04
Smp_146740.1 SmLINC05684-IBu 0.85 5.11e-05 8.00e-04
Smp_146740.1 SmLINC06024-IBu 0.81 2.00e-04 2.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_146740.1 0 1.66 1.14 4.91 6.16
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_146740.1 0.92 1.00e-06 5.35e-05
Smp_037720.1 Smp_146740.1 0.90 2.67e-06 1.00e-04
Smp_056460.1 Smp_146740.1 0.90 3.27e-06 1.00e-04
Smp_083430.1 Smp_146740.1 0.95 5.87e-08 7.53e-06
Smp_095410.1 Smp_146740.1 0.93 5.00e-07 3.28e-05
Smp_123880.1 Smp_146740.1 0.90 3.54e-06 1.00e-04
Smp_146740.1 Smp_131410.1 0.90 4.08e-06 1.00e-04
Smp_137810.1 Smp_146740.1 0.94 1.45e-07 1.39e-05
Smp_140720.1 Smp_146740.1 0.90 4.85e-06 1.00e-04
Smp_155570.1 Smp_146740.1 0.90 2.92e-06 1.00e-04
Smp_163700.1 Smp_146740.1 0.91 1.87e-06 8.31e-05
Smp_192780.1 Smp_146740.1 0.92 1.07e-06 5.60e-05
Smp_194380.1 Smp_146740.1 0.90 3.33e-06 1.00e-04
Smp_196830.1 Smp_146740.1 0.94 9.82e-08 1.06e-05
Smp_146740.1 Smp_202610.1 0.90 4.38e-06 1.00e-04