Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_146720.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
Smp_146720.1 0 0.62 4.79 4.89 4.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_146720.1 SmLINC00554-IBu -0.82 1.00e-04 1.70e-03
Smp_146720.1 SmLINC05632-IBu 0.89 6.44e-06 1.00e-04
Smp_146720.1 SmLINC05870-IBu 0.86 3.55e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_146720.1 0 0.62 4.79 4.89 4.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 Smp_146720.1 0.91 1.91e-06 8.44e-05
Smp_129110.1 Smp_146720.1 0.90 3.29e-06 1.00e-04