Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_145950.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_145950.1 0 1.16 2.62 -4.07 -0.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145950.1 SmLINC00372-IBu 0.96 5.03e-09 1.35e-06
Smp_145950.1 SmLINC01316-IBu 0.89 5.87e-06 1.00e-04
Smp_145950.1 SmLINC04430-IBu 0.80 2.00e-04 2.90e-03
Smp_145950.1 SmLINC04947-IBu 0.88 1.30e-05 3.00e-04
Smp_145950.1 SmLINC05559-IBu 0.91 1.90e-06 8.10e-05
Smp_145950.1 SmLINC06646-IBu 0.81 2.00e-04 2.50e-03
Smp_145950.1 SmLINC06700-IBu 0.83 1.00e-04 1.40e-03
Smp_145950.1 SmLINC06836-IBu 0.95 2.56e-08 4.04e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_021920.1 0 0.33 1.47 -5.43 -11.17
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145950.1 Smp_017650.1 0.91 1.52e-06 7.17e-05
Smp_145950.1 Smp_021340.3 0.90 4.72e-06 1.00e-04
Smp_145950.1 Smp_021920.1 0.90 4.59e-06 1.00e-04
Smp_145950.1 Smp_032120.1 0.96 6.07e-09 1.64e-06
Smp_145950.1 Smp_034840.1 0.95 1.66e-08 3.21e-06
Smp_145950.1 Smp_036270.3 0.90 4.41e-06 1.00e-04
Smp_145950.1 Smp_059340.3 0.92 1.17e-06 5.97e-05
Smp_059530.1 Smp_145950.1 0.96 1.07e-08 2.39e-06
Smp_145950.1 Smp_062070.1 0.96 9.28e-09 2.17e-06
Smp_145950.1 Smp_083380.2 0.94 1.00e-07 1.08e-05
Smp_145950.1 Smp_084940.2 0.98 9.49e-11 1.12e-07
Smp_145950.1 Smp_098370.1 0.92 7.10e-07 4.19e-05
Smp_103540.1 Smp_145950.1 0.96 9.87e-09 2.26e-06
Smp_145950.1 Smp_159070.3 0.96 7.07e-09 1.81e-06
Smp_145950.1 Smp_159150.1 0.94 9.87e-08 1.07e-05