Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_145810.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145810.2 SmLINC02255-IBu 0.84 8.27e-05 1.20e-03
Smp_145810.2 SmLINC02657-IBu 0.82 1.00e-04 1.70e-03
Smp_145810.2 SmLINC05989-IBu 0.85 5.54e-05 9.00e-04
Smp_145810.2 SmLINC06128-IBu 0.87 2.38e-05 4.00e-04
Smp_145810.2 SmLINC06535-IBu 0.82 1.00e-04 1.70e-03
Smp_145810.2 SmLINC06892-IBu 0.87 1.62e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145810.2 SmLINC00998-IBu 0.93 4.28e-07 2.94e-05
Smp_145810.2 SmLINC02455-IBu 0.90 2.68e-06 1.00e-04
Smp_145810.2 SmLINC04864-IBu 0.90 3.60e-06 1.00e-04
Smp_004230.1 Smp_145810.2 0.92 6.52e-07 3.95e-05
Smp_005860.1 Smp_145810.2 0.96 6.78e-09 1.76e-06
Smp_145810.2 Smp_005860.3 0.92 5.68e-07 3.59e-05
Smp_014400.5 Smp_145810.2 0.93 4.27e-07 2.94e-05
Smp_145810.2 Smp_018880.1 0.92 6.93e-07 4.12e-05
Smp_145810.2 Smp_026450.1 0.90 3.80e-06 1.00e-04
Smp_145810.2 Smp_028990.2 0.91 1.60e-06 7.46e-05
Smp_145810.2 Smp_033610.1 0.96 1.17e-08 2.54e-06
Smp_145810.2 Smp_037020.1 0.92 1.00e-06 5.37e-05
Smp_145810.2 Smp_038560.6 0.90 2.80e-06 1.00e-04
Smp_042160.1 Smp_145810.2 0.90 2.56e-06 1.00e-04
Smp_145810.2 Smp_051230.3 0.92 9.93e-07 5.31e-05
Smp_055210.1 Smp_145810.2 0.90 2.63e-06 1.00e-04
Smp_145810.2 Smp_055220.2 0.94 6.18e-08 7.79e-06
Smp_145810.2 Smp_060420.3 0.91 2.35e-06 9.75e-05
Smp_145810.2 Smp_061580.1 0.94 1.80e-07 1.62e-05
Smp_061940.1 Smp_145810.2 0.90 4.25e-06 1.00e-04
Smp_074570.1 Smp_145810.2 0.92 6.87e-07 4.10e-05
Smp_083180.1 Smp_145810.2 0.90 3.55e-06 1.00e-04
Smp_145810.2 Smp_085290.3 0.94 1.61e-07 1.50e-05
Smp_097750.1 Smp_145810.2 0.96 3.71e-09 1.19e-06
Smp_100790.1 Smp_145810.2 0.92 6.52e-07 3.95e-05
Smp_106390.1 Smp_145810.2 0.96 2.60e-09 9.44e-07
Smp_145810.2 Smp_108050.1 0.96 6.91e-09 1.78e-06
Smp_110400.3 Smp_145810.2 0.94 1.07e-07 1.13e-05
Smp_145810.2 Smp_113760.1 0.94 1.02e-07 1.09e-05
Smp_114740.1 Smp_145810.2 0.92 6.52e-07 3.95e-05
Smp_145810.2 Smp_119050.1 0.90 3.37e-06 1.00e-04
Smp_145810.2 Smp_120920.3 0.91 1.29e-06 6.41e-05
Smp_133310.1 Smp_145810.2 0.90 2.64e-06 1.00e-04
Smp_145810.2 Smp_134410.1 0.90 3.34e-06 1.00e-04
Smp_145710.1 Smp_145810.2 0.95 3.56e-08 5.37e-06
Smp_149670.1 Smp_145810.2 0.93 3.69e-07 2.66e-05
Smp_150690.2 Smp_145810.2 0.94 8.20e-08 9.45e-06
Smp_154020.1 Smp_145810.2 0.93 3.45e-07 2.54e-05
Smp_145810.2 Smp_157450.1 0.90 3.78e-06 1.00e-04
Smp_145810.2 Smp_159900.1 0.91 2.42e-06 9.97e-05
Smp_145810.2 Smp_162370.1 0.92 6.03e-07 3.74e-05
Smp_168380.1 Smp_145810.2 0.93 2.03e-07 1.76e-05
Smp_145810.2 Smp_182770.1 0.95 2.24e-08 3.92e-06
Smp_182880.1 Smp_145810.2 0.90 2.70e-06 1.00e-04
Smp_145810.2 Smp_184460.1 0.94 1.88e-07 1.67e-05
Smp_145810.2 Smp_184750.1 0.90 3.16e-06 1.00e-04
Smp_185180.1 Smp_145810.2 0.94 6.80e-08 8.32e-06
Smp_185220.1 Smp_145810.2 0.94 8.66e-08 9.81e-06
Smp_145810.2 Smp_185360.1 0.95 5.05e-08 6.80e-06
Smp_188900.1 Smp_145810.2 0.95 2.39e-08 4.09e-06
Smp_145810.2 Smp_190390.1 0.90 3.34e-06 1.00e-04
Smp_145810.2 Smp_194040.1 0.91 2.21e-06 9.35e-05
Smp_145810.2 Smp_195070.1 0.91 1.47e-06 7.02e-05
Smp_145810.2 Smp_195160.1 0.92 9.27e-07 5.05e-05
Smp_145810.2 Smp_202140.1 0.90 3.87e-06 1.00e-04
Smp_202700.1 Smp_145810.2 0.93 4.84e-07 3.21e-05
Smp_145810.2 Smp_205080.1 0.90 4.25e-06 1.00e-04
Smp_206150.1 Smp_145810.2 0.90 4.60e-06 1.00e-04