Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_145490.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_145490.1 0 3.57 3.53 3.37 9.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145490.1 SmLINC00001-IBu 0.82 1.00e-04 2.10e-03
Smp_145490.1 SmLINC00004-IBu 0.80 2.00e-04 2.80e-03
Smp_145490.1 SmLINC00007-IBu 0.82 1.00e-04 1.80e-03
Smp_145490.1 SmLINC01520-IBu 0.90 4.45e-06 1.00e-04
Smp_145490.1 SmLINC02029-IBu 0.93 3.90e-07 2.64e-05
Smp_145490.1 SmLINC02376-IBu 0.84 7.10e-05 1.10e-03
Smp_145490.1 SmLINC02539-IBu 0.85 4.15e-05 7.00e-04
Smp_145490.1 SmLINC02577-IBu 0.89 6.50e-06 1.00e-04
Smp_145490.1 SmLINC02776-IBu 0.80 2.00e-04 2.90e-03
Smp_145490.1 SmLINC02783-IBu 0.92 6.89e-07 3.94e-05
Smp_145490.1 SmLINC02786-IBu 0.96 5.42e-09 1.42e-06
Smp_145490.1 SmLINC03326-IBu 0.81 2.00e-04 2.70e-03
Smp_145490.1 SmLINC03658-IBu 0.89 4.95e-06 1.00e-04
Smp_145490.1 SmLINC04235-IBu 0.94 1.31e-07 1.24e-05
Smp_145490.1 SmLINC04237-IBu 0.87 2.02e-05 4.00e-04
Smp_145490.1 SmLINC04627-IBu 0.91 1.77e-06 7.70e-05
Smp_145490.1 SmLINC04896-IBu 0.89 8.29e-06 2.00e-04
Smp_145490.1 SmLINC05404-IBu 0.94 1.03e-07 1.05e-05
Smp_145490.1 SmLINC05604-IBu 0.80 3.00e-04 3.20e-03
Smp_145490.1 SmLINC05684-IBu 0.95 3.72e-08 5.21e-06
Smp_145490.1 SmLINC06239-IBu 0.94 1.45e-07 1.33e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_145490.1 0 3.57 3.53 3.37 9.86
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_145490.1 0.92 7.67e-07 4.43e-05
Smp_004420.3 Smp_145490.1 0.94 9.02e-08 1.00e-05
Smp_145490.1 Smp_016490.2 0.90 3.15e-06 1.00e-04
Smp_145490.1 Smp_041540.1 0.97 4.70e-10 3.14e-07
Smp_145490.1 Smp_070540.1 0.95 3.75e-08 5.56e-06
Smp_145490.1 Smp_105450.1 0.97 1.83e-09 7.51e-07
Smp_145490.1 Smp_105450.2 0.97 6.11e-10 3.71e-07
Smp_126340.1 Smp_145490.1 0.95 3.60e-08 5.40e-06
Smp_145490.1 Smp_130100.1 0.92 5.46e-07 3.49e-05
Smp_145490.1 Smp_130970.1 0.94 6.97e-08 8.46e-06
Smp_145490.1 Smp_136730.1 0.94 1.02e-07 1.09e-05
Smp_137460.1 Smp_145490.1 0.99 1.78e-14 5.59e-10
Smp_145490.1 Smp_137700.1 0.96 6.14e-09 1.65e-06
Smp_145490.1 Smp_138360.1 0.98 2.17e-11 4.46e-08
Smp_145490.1 Smp_139160.1 0.96 1.27e-08 2.67e-06
Smp_145490.1 Smp_139240.1 0.91 1.67e-06 7.66e-05
Smp_152150.1 Smp_145490.1 0.98 6.03e-12 2.01e-08
Smp_145490.1 Smp_162320.1 0.92 9.61e-07 5.19e-05
Smp_145490.1 Smp_164400.1 0.99 2.72e-15 1.75e-10
Smp_145490.1 Smp_170840.1 0.92 1.03e-06 5.46e-05
Smp_181070.1 Smp_145490.1 0.96 7.08e-09 1.81e-06
Smp_145490.1 Smp_187140.1 0.91 1.26e-06 6.28e-05
Smp_145490.1 Smp_194910.1 0.94 1.67e-07 1.54e-05
Smp_145490.1 Smp_203030.1 0.90 3.57e-06 1.00e-04
Smp_145490.1 Smp_205580.1 0.91 1.46e-06 6.99e-05