Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_145320.1 Data

Correlation between Smp_145320.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_145320.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_145320.1 0 0.65 -1.49 3.35 3.95

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145320.1 SmLINC00001-IBu 0.81 1.00e-04 2.20e-03
Smp_145320.1 SmLINC00004-IBu 0.87 1.77e-05 4.00e-04
Smp_145320.1 SmLINC00171-IBu 0.89 5.43e-06 1.00e-04
Smp_145320.1 SmLINC00266-IBu 0.89 4.98e-06 1.00e-04
Smp_145320.1 SmLINC00369-IBu 0.88 1.11e-05 2.00e-04
Smp_145320.1 SmLINC00376-IBu 0.89 7.58e-06 2.00e-04
Smp_145320.1 SmLINC00525-IBu 0.91 2.04e-06 8.53e-05
Smp_145320.1 SmLINC00548-IBu 0.91 2.28e-06 9.22e-05
Smp_145320.1 SmLINC00633-IBu 0.89 5.35e-06 1.00e-04
Smp_145320.1 SmLINC01066-IBu 0.86 3.89e-05 7.00e-04
Smp_145320.1 SmLINC01084-IBu 0.92 1.10e-06 5.51e-05
Smp_145320.1 SmLINC01122-IBu 0.81 1.00e-04 2.10e-03
Smp_145320.1 SmLINC01139-IBu 0.82 1.00e-04 1.80e-03
Smp_145320.1 SmLINC01171-IBu 0.81 1.00e-04 2.30e-03
Smp_145320.1 SmLINC01231-IBu 0.83 9.85e-05 1.30e-03
Smp_145320.1 SmLINC01431-IBu 0.94 6.80e-08 7.87e-06
Smp_145320.1 SmLINC01433-IBu 0.80 2.00e-04 3.00e-03
Smp_145320.1 SmLINC01435-IBu 0.84 6.13e-05 9.00e-04
Smp_145320.1 SmLINC01538-IBu 0.85 5.90e-05 9.00e-04
Smp_145320.1 SmLINC01569-IBu 0.82 1.00e-04 1.90e-03
Smp_145320.1 SmLINC01746-IBu 0.84 8.07e-05 1.20e-03
Smp_145320.1 SmLINC02084-IBu 0.97 1.83e-09 6.97e-07
Smp_145320.1 SmLINC02539-IBu 0.82 1.00e-04 1.70e-03
Smp_145320.1 SmLINC02540-IBu 0.80 3.00e-04 3.40e-03
Smp_145320.1 SmLINC02545-IBu 0.92 8.91e-07 4.72e-05
Smp_145320.1 SmLINC02546-IBu 0.97 1.47e-09 6.06e-07
Smp_145320.1 SmLINC03108-IBu 0.93 2.02e-07 1.67e-05
Smp_145320.1 SmLINC03309-IBu 0.85 4.00e-05 7.00e-04
Smp_145320.1 SmLINC03693-IBu 0.86 2.77e-05 5.00e-04
Smp_145320.1 SmLINC03927-IBu 0.95 2.73e-08 4.22e-06
Smp_145320.1 SmLINC04421-IBu 0.89 6.50e-06 1.00e-04
Smp_145320.1 SmLINC04423-IBu 0.81 2.00e-04 2.50e-03
Smp_145320.1 SmLINC04432-IBu 0.81 1.00e-04 2.20e-03
Smp_145320.1 SmLINC04478-IBu 0.80 3.00e-04 3.40e-03
Smp_145320.1 SmLINC04684-IBu 0.94 8.16e-08 8.92e-06
Smp_145320.1 SmLINC05147-IBu 0.88 9.20e-06 2.00e-04
Smp_145320.1 SmLINC05258-IBu 0.90 2.65e-06 1.00e-04
Smp_145320.1 SmLINC05289-IBu 0.80 3.00e-04 3.30e-03
Smp_145320.1 SmLINC05604-IBu 0.87 2.47e-05 5.00e-04
Smp_145320.1 SmLINC06024-IBu 0.87 2.45e-05 5.00e-04
Smp_145320.1 SmLINC06221-IBu 0.83 9.97e-05 1.40e-03
Smp_145320.1 SmLINC06415-IBu 0.85 5.33e-05 8.00e-04
Smp_145320.1 SmLINC06418-IBu 0.80 2.00e-04 3.00e-03
Smp_145320.1 SmLINC06490-IBu -0.80 3.00e-04 3.20e-03
Smp_145320.1 SmLINC06536-IBu 0.83 1.00e-04 1.40e-03
Smp_145320.1 SmLINC06543-IBu 0.86 2.58e-05 5.00e-04

Correlation between Smp_145320.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145320.1 0 0.65 -1.49 3.35 3.95
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031770.10 Smp_145320.1 0.95 3.03e-08 4.81e-06
Smp_033260.1 Smp_145320.1 0.90 4.21e-06 1.00e-04
Smp_056460.1 Smp_145320.1 0.93 3.14e-07 2.38e-05
Smp_058660.1 Smp_145320.1 0.93 2.95e-07 2.28e-05
Smp_095410.1 Smp_145320.1 0.96 3.60e-09 1.16e-06
Smp_145320.1 Smp_145400.1 0.93 3.19e-07 2.40e-05
Smp_145320.1 Smp_172960.1 0.93 3.12e-07 2.37e-05
Smp_145320.1 Smp_192780.1 0.94 1.13e-07 1.18e-05
Smp_194860.1 Smp_145320.1 0.92 1.19e-06 6.04e-05