Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_145200.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_145200.1 0 1.22 4.73 6.12 5.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145200.1 SmLINC04271-IBu -0.51 4.99e-02 1.11e-01
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
Smp_145200.1 0 1.22 4.73 6.12 5.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145200.1 SmLINC00477-IBu 0.80 3.00e-04 3.20e-03
Smp_145200.1 SmLINC00548-IBu 0.83 1.00e-04 1.40e-03
Smp_145200.1 SmLINC00769-IBu 0.86 2.53e-05 5.00e-04
Smp_145200.1 SmLINC01139-IBu 0.83 9.18e-05 1.30e-03
Smp_145200.1 SmLINC01231-IBu 0.84 8.32e-05 1.20e-03
Smp_145200.1 SmLINC01538-IBu 0.83 9.84e-05 1.30e-03
Smp_145200.1 SmLINC01733-IBu 0.81 2.00e-04 2.50e-03
Smp_145200.1 SmLINC01746-IBu 0.82 1.00e-04 1.90e-03
Smp_145200.1 SmLINC03309-IBu 0.85 5.78e-05 9.00e-04
Smp_145200.1 SmLINC03693-IBu 0.80 3.00e-04 3.20e-03
Smp_145200.1 SmLINC04054-IBu 0.82 1.00e-04 1.70e-03
Smp_145200.1 SmLINC04345-IBu 0.83 1.00e-04 1.60e-03
Smp_145200.1 SmLINC04432-IBu 0.92 5.33e-07 3.29e-05
Smp_145200.1 SmLINC04475-IBu 0.91 1.65e-06 7.33e-05
Smp_145200.1 SmLINC04637-IBu 0.85 5.77e-05 9.00e-04
Smp_145200.1 SmLINC04663-IBu 0.81 1.00e-04 2.20e-03
Smp_145200.1 SmLINC04747-IBu 0.83 9.85e-05 1.30e-03
Smp_145200.1 SmLINC04769-IBu 0.83 1.00e-04 1.50e-03
Smp_145200.1 SmLINC04953-IBu 0.81 2.00e-04 2.40e-03
Smp_145200.1 SmLINC05171-IBu 0.82 1.00e-04 2.00e-03
Smp_145200.1 SmLINC05632-IBu 0.83 1.00e-04 1.40e-03
Smp_145200.1 SmLINC05870-IBu 0.94 1.11e-07 1.10e-05
Smp_145200.1 SmLINC06010-IBu 0.89 8.10e-06 2.00e-04
Smp_145200.1 SmLINC06221-IBu 0.82 1.00e-04 1.70e-03
Smp_145200.1 SmLINC06444-IBu 0.86 2.91e-05 5.00e-04
Smp_145200.1 SmLINC06449-IBu 0.82 1.00e-04 1.90e-03
Smp_145200.1 SmLINC06536-IBu 0.83 9.64e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_145200.1 0 1.22 4.73 6.12 5.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_145200.1 Smp_125200.1 0.92 1.19e-06 6.05e-05
Smp_129110.1 Smp_145200.1 0.94 1.79e-07 1.61e-05