Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_144920.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
Smp_144920.1 0 0.61 2.49 4.01 4.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144920.1 SmLINC03542-IBu 0.61 1.45e-02 4.55e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_144920.1 0 0.61 2.49 4.01 4.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144920.1 SmLINC00001-IBu 0.80 2.00e-04 2.80e-03
Smp_144920.1 SmLINC00004-IBu 0.82 1.00e-04 1.70e-03
Smp_144920.1 SmLINC00266-IBu 0.87 1.82e-05 4.00e-04
Smp_144920.1 SmLINC00282-IBu -0.84 8.29e-05 1.20e-03
Smp_144920.1 SmLINC00556-IBu -0.81 1.00e-04 2.30e-03
Smp_144920.1 SmLINC01084-IBu 0.82 1.00e-04 1.80e-03
Smp_144920.1 SmLINC01431-IBu 0.84 8.77e-05 1.20e-03
Smp_144920.1 SmLINC02084-IBu 0.85 5.36e-05 8.00e-04
Smp_144920.1 SmLINC02255-IBu -0.93 4.47e-07 2.91e-05
Smp_144920.1 SmLINC02539-IBu 0.80 3.00e-04 3.40e-03
Smp_144920.1 SmLINC02545-IBu 0.83 1.00e-04 1.50e-03
Smp_144920.1 SmLINC02546-IBu 0.82 1.00e-04 1.90e-03
Smp_144920.1 SmLINC02630-IBu -0.86 3.62e-05 6.00e-04
Smp_144920.1 SmLINC02657-IBu -0.94 1.46e-07 1.33e-05
Smp_144920.1 SmLINC03849-IBu -0.83 1.00e-04 1.60e-03
Smp_144920.1 SmLINC03927-IBu 0.87 2.27e-05 4.00e-04
Smp_144920.1 SmLINC04421-IBu 0.85 5.76e-05 9.00e-04
Smp_144920.1 SmLINC05284-IBu -0.87 2.11e-05 4.00e-04
Smp_144920.1 SmLINC05604-IBu 0.82 1.00e-04 1.80e-03
Smp_144920.1 SmLINC05720-IBu -0.80 2.00e-04 3.00e-03
Smp_144920.1 SmLINC06415-IBu 0.82 1.00e-04 1.70e-03
Smp_144920.1 SmLINC06535-IBu -0.90 3.04e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_144920.1 0 0.61 2.49 4.01 4.87
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144920.1 Smp_035090.2 -0.91 2.33e-06 9.68e-05
Smp_144920.1 Smp_052280.2 0.90 3.82e-06 1.00e-04
Smp_144920.1 Smp_055340.2 0.91 2.23e-06 9.39e-05
Smp_144920.1 Smp_157140.1 0.90 4.34e-06 1.00e-04
Smp_144920.1 Smp_172510.2 0.91 1.53e-06 7.22e-05