Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_144480.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_144480.1 0 -1.03 -4.71 1.39 2.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144480.1 SmLINC00004-IBu 0.81 1.00e-04 2.20e-03
Smp_144480.1 SmLINC00171-IBu 0.82 1.00e-04 1.90e-03
Smp_144480.1 SmLINC00266-IBu 0.86 2.52e-05 5.00e-04
Smp_144480.1 SmLINC00369-IBu 0.81 2.00e-04 2.70e-03
Smp_144480.1 SmLINC00376-IBu 0.80 3.00e-04 3.40e-03
Smp_144480.1 SmLINC00525-IBu 0.87 2.24e-05 4.00e-04
Smp_144480.1 SmLINC00548-IBu 0.83 1.00e-04 1.60e-03
Smp_144480.1 SmLINC00633-IBu 0.84 7.50e-05 1.10e-03
Smp_144480.1 SmLINC01084-IBu 0.86 3.76e-05 6.00e-04
Smp_144480.1 SmLINC01431-IBu 0.86 3.69e-05 6.00e-04
Smp_144480.1 SmLINC01435-IBu 0.81 2.00e-04 2.50e-03
Smp_144480.1 SmLINC01520-IBu 0.80 3.00e-04 3.40e-03
Smp_144480.1 SmLINC02084-IBu 0.91 2.49e-06 9.83e-05
Smp_144480.1 SmLINC02539-IBu 0.81 1.00e-04 2.20e-03
Smp_144480.1 SmLINC02545-IBu 0.93 3.95e-07 2.67e-05
Smp_144480.1 SmLINC02546-IBu 0.88 1.37e-05 3.00e-04
Smp_144480.1 SmLINC03108-IBu 0.89 7.00e-06 2.00e-04
Smp_144480.1 SmLINC03927-IBu 0.95 4.51e-08 5.94e-06
Smp_144480.1 SmLINC04421-IBu 0.86 2.62e-05 5.00e-04
Smp_144480.1 SmLINC04684-IBu 0.84 8.15e-05 1.20e-03
Smp_144480.1 SmLINC05147-IBu 0.81 1.00e-04 2.10e-03
Smp_144480.1 SmLINC05258-IBu 0.80 3.00e-04 3.40e-03
Smp_144480.1 SmLINC05604-IBu 0.86 2.57e-05 5.00e-04
Smp_144480.1 SmLINC06024-IBu 0.83 1.00e-04 1.60e-03
Smp_144480.1 SmLINC06543-IBu 0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_144480.1 0 -1.03 -4.71 1.39 2.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031770.10 Smp_144480.1 0.9 2.59e-06 1.00e-04
Smp_095410.1 Smp_144480.1 0.9 3.41e-06 1.00e-04