Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_144440.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_144440.1 0 7.66 6.96 9.39 14.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144440.1 SmLINC00001-IBu 0.80 3.00e-04 3.20e-03
Smp_144440.1 SmLINC02376-IBu 0.84 7.33e-05 1.10e-03
Smp_144440.1 SmLINC02783-IBu 0.83 1.00e-04 1.50e-03
Smp_144440.1 SmLINC03326-IBu 0.80 3.00e-04 3.10e-03
Smp_144440.1 SmLINC04235-IBu 0.89 5.24e-06 1.00e-04
Smp_144440.1 SmLINC04627-IBu 0.90 4.43e-06 1.00e-04
Smp_144440.1 SmLINC05684-IBu 0.83 1.00e-04 1.50e-03
Smp_144440.1 SmLINC06239-IBu 0.94 1.56e-07 1.39e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC03570-IBu 0 3.56 1.97 3.24 6.26
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
SmLINC04710-IBu 0 -0.76 -0.04 -2.76 4.43
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
SmLINC06800-IBu 0 -3.84 -1.17 -0.07 3.49
Smp_000190.1 0 0.99 1.82 3.64 5.94
Smp_000270.1 0 -3.32 -1.95 -0.32 6.22
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_026400.1 0 0.88 0.91 0.27 4.54
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_055260.1 0 -1.90 -1.11 0.06 5.74
Smp_055740.1 0 -1.21 -3.82 3.49 7.06
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_095980.1 0 2.98 -3.66 0.39 7.55
Smp_102020.1 0 -0.28 -4.43 0.53 6.11
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_121930.1 0 1.51 3.52 6.68 9.02
Smp_121930.2 0 1.74 1.71 6.11 8.12
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_128160.1 0 0.17 1.21 1.97 4.65
Smp_129410.1 0 0.18 1.93 1.84 4.77
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131110.5 0 -4.13 -2.00 1.07 7.44
Smp_131500.1 0 1.11 1.77 4.12 6.64
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_141160.1 0 0.62 1.59 2.79 5.35
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_146180.1 0 0.60 -1.14 0.53 4.12
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_153070.1 0 -1.48 -3.15 4.90 8.45
Smp_154590.1 0 1.49 -3.83 3.03 7.38
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_179170.1 0 1.52 0.09 6.08 8.60
Smp_187030.1 0 -1.05 0.53 2.40 4.29
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_199580.1 0 0.00 3.75 4.57 6.47
Smp_200110.1 0 1.46 2.99 3.53 6.65
Smp_201330.1 0 1.13 0.91 1.95 4.84
Smp_202830.1 0 0.98 -0.31 1.06 6.94
Smp_213140.1 0 1.55 -1.08 2.14 3.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144440.1 SmLINC03370-IBu 0.97 1.80e-10 1.69e-07
Smp_144440.1 SmLINC03570-IBu 0.91 2.46e-06 1.00e-04
Smp_144440.1 SmLINC04627-IBu 0.90 4.43e-06 1.00e-04
Smp_144440.1 SmLINC04669-IBu 0.96 2.88e-09 1.00e-06
Smp_144440.1 SmLINC04710-IBu 0.91 2.19e-06 9.28e-05
Smp_144440.1 SmLINC06239-IBu 0.94 1.56e-07 1.46e-05
Smp_144440.1 SmLINC06797-IBu 0.92 9.51e-07 5.15e-05
Smp_144440.1 SmLINC06800-IBu 0.90 3.95e-06 1.00e-04
Smp_000190.1 Smp_144440.1 0.92 7.41e-07 4.32e-05
Smp_144440.1 Smp_000270.1 0.96 8.78e-09 2.09e-06
Smp_144440.1 Smp_000280.1 0.96 3.54e-09 1.15e-06
Smp_000390.1 Smp_144440.1 0.99 1.94e-13 2.41e-09
Smp_144440.1 Smp_000400.1 0.92 7.03e-07 4.16e-05
Smp_144440.1 Smp_000410.1 0.97 1.41e-09 6.37e-07
Smp_144440.1 Smp_000420.1 0.97 2.13e-10 1.89e-07
Smp_000430.1 Smp_144440.1 0.96 4.17e-09 1.28e-06
Smp_004420.3 Smp_144440.1 0.93 2.44e-07 1.99e-05
Smp_144440.1 Smp_013540.1 0.98 1.68e-11 3.79e-08
Smp_014610.1 Smp_144440.1 0.96 3.47e-09 1.14e-06
Smp_020540.1 Smp_144440.1 0.96 1.27e-08 2.68e-06
Smp_026400.1 Smp_144440.1 0.92 8.05e-07 4.58e-05
Smp_144440.1 Smp_033250.1 0.97 5.15e-10 3.33e-07
Smp_144440.1 Smp_041880.1 0.98 4.10e-11 6.65e-08
Smp_144440.1 Smp_050270.1 0.98 3.15e-11 5.64e-08
Smp_050750.1 Smp_144440.1 0.94 1.43e-07 1.38e-05
Smp_054010.1 Smp_144440.1 0.93 4.36e-07 2.99e-05
Smp_144440.1 Smp_055260.1 0.95 5.99e-08 7.63e-06
Smp_144440.1 Smp_055740.1 0.90 4.05e-06 1.00e-04
Smp_056700.1 Smp_144440.1 0.98 2.07e-12 1.03e-08
Smp_144440.1 Smp_058160.1 0.94 1.18e-07 1.21e-05
Smp_144440.1 Smp_070360.1 0.95 5.60e-08 7.29e-06
Smp_144440.1 Smp_076320.1 0.96 2.51e-09 9.23e-07
Smp_077890.1 Smp_144440.1 0.96 6.72e-09 1.75e-06
Smp_144440.1 Smp_077900.1 0.98 7.85e-12 2.37e-08
Smp_077920.1 Smp_144440.1 0.98 7.47e-12 2.30e-08
Smp_144440.1 Smp_095350.1 0.97 9.13e-10 4.80e-07
Smp_144440.1 Smp_095980.1 0.93 2.94e-07 2.27e-05
Smp_102020.1 Smp_144440.1 0.96 7.77e-09 1.93e-06
Smp_112450.1 Smp_144440.1 0.98 2.39e-11 4.75e-08
Smp_121070.1 Smp_144440.1 0.97 3.21e-10 2.47e-07
Smp_121930.1 Smp_144440.1 0.92 9.03e-07 4.96e-05
Smp_144440.1 Smp_121930.2 0.90 2.81e-06 1.00e-04
Smp_122280.1 Smp_144440.1 0.96 4.40e-09 1.33e-06
Smp_144440.1 Smp_128160.1 0.95 4.74e-08 6.51e-06
Smp_144440.1 Smp_129410.1 0.90 4.58e-06 1.00e-04
Smp_144440.1 Smp_130970.1 0.96 7.03e-09 1.80e-06
Smp_144440.1 Smp_131110.2 0.96 5.34e-09 1.50e-06
Smp_131110.5 Smp_144440.1 0.93 4.00e-07 2.81e-05
Smp_131500.1 Smp_144440.1 0.91 1.48e-06 7.05e-05
Smp_144440.1 Smp_137360.1 0.99 2.94e-13 3.11e-09
Smp_144440.1 Smp_137700.1 0.92 5.40e-07 3.46e-05
Smp_144440.1 Smp_138360.1 0.94 1.78e-07 1.61e-05
Smp_144440.1 Smp_138570.1 0.97 2.37e-10 2.02e-07
Smp_144440.1 Smp_141160.1 0.91 1.63e-06 7.55e-05
Smp_144440.1 Smp_146180.1 0.91 1.43e-06 6.86e-05
Smp_146480.1 Smp_144440.1 0.98 6.50e-12 2.11e-08
Smp_144440.1 Smp_151160.1 0.98 1.12e-11 2.95e-08
Smp_144440.1 Smp_153070.1 0.94 1.51e-07 1.43e-05
Smp_144440.1 Smp_154590.1 0.92 1.02e-06 5.44e-05
Smp_144440.1 Smp_155310.1 0.97 1.72e-10 1.64e-07
Smp_155310.2 Smp_144440.1 0.94 1.10e-07 1.15e-05
Smp_159650.1 Smp_144440.1 0.90 4.53e-06 1.00e-04
Smp_165360.1 Smp_144440.1 0.98 5.38e-11 7.89e-08
Smp_144440.1 Smp_172010.1 0.96 6.91e-09 1.78e-06
Smp_175560.1 Smp_144440.1 0.99 9.09e-14 1.54e-09
Smp_179170.1 Smp_144440.1 0.94 9.19e-08 1.02e-05
Smp_144440.1 Smp_187030.1 0.91 1.62e-06 7.50e-05
Smp_144440.1 Smp_191910.1 0.98 1.52e-11 3.56e-08
Smp_144440.1 Smp_194840.1 0.93 3.13e-07 2.37e-05
Smp_199580.1 Smp_144440.1 0.90 4.47e-06 1.00e-04
Smp_144440.1 Smp_200110.1 0.90 4.12e-06 1.00e-04
Smp_144440.1 Smp_201330.1 0.95 2.85e-08 4.61e-06
Smp_144440.1 Smp_202830.1 0.92 5.51e-07 3.51e-05
Smp_144440.1 Smp_213140.1 0.90 4.65e-06 1.00e-04