Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_144350.1 Data

Correlation between Smp_144350.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_144350.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_144350.1 0 2.33 4.53 0.32 -0.03

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144350.1 SmLINC00372-IBu 0.98 3.19e-12 1.22e-08
Smp_144350.1 SmLINC01316-IBu 0.86 3.27e-05 6.00e-04
Smp_144350.1 SmLINC04430-IBu 0.92 6.21e-07 3.66e-05
Smp_144350.1 SmLINC04947-IBu 0.92 6.35e-07 3.72e-05
Smp_144350.1 SmLINC05559-IBu 0.97 2.01e-10 1.67e-07
Smp_144350.1 SmLINC06700-IBu 0.88 9.62e-06 2.00e-04
Smp_144350.1 SmLINC06836-IBu 0.98 5.84e-12 1.78e-08

Correlation between Smp_144350.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_144350.1 0.93 2.69e-07 2.13e-05
Smp_144350.1 Smp_032120.1 0.96 4.24e-09 1.29e-06
Smp_034840.1 Smp_144350.1 0.92 1.00e-06 5.34e-05
Smp_036270.3 Smp_144350.1 0.91 1.88e-06 8.35e-05
Smp_062070.1 Smp_144350.1 0.95 3.08e-08 4.86e-06
Smp_144350.1 Smp_084940.2 0.94 1.01e-07 1.09e-05
Smp_098370.1 Smp_144350.1 0.90 2.76e-06 1.00e-04
Smp_103540.1 Smp_144350.1 0.93 2.33e-07 1.93e-05
Smp_138080.1 Smp_144350.1 0.93 2.48e-07 2.02e-05
Smp_159070.3 Smp_144350.1 0.98 2.51e-11 4.90e-08
Smp_159150.1 Smp_144350.1 0.94 7.46e-08 8.86e-06