Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_144120.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_144120.1 0 1.28 2.86 -1.28 -2.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144120.1 SmLINC00372-IBu 0.95 5.18e-08 6.54e-06
Smp_144120.1 SmLINC01316-IBu 0.90 2.79e-06 1.00e-04
Smp_144120.1 SmLINC02646-IBu 0.81 2.00e-04 2.60e-03
Smp_144120.1 SmLINC04430-IBu 0.88 1.01e-05 2.00e-04
Smp_144120.1 SmLINC05559-IBu 0.89 8.48e-06 2.00e-04
Smp_144120.1 SmLINC06646-IBu 0.81 2.00e-04 2.50e-03
Smp_144120.1 SmLINC06700-IBu 0.89 6.76e-06 2.00e-04
Smp_144120.1 SmLINC06836-IBu 0.92 9.78e-07 5.05e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 Smp_144120.1 0.91 2.09e-06 8.98e-05
Smp_021340.3 Smp_144120.1 0.92 7.81e-07 4.48e-05
Smp_144120.1 Smp_032120.1 0.95 3.46e-08 5.26e-06
Smp_059340.3 Smp_144120.1 0.91 2.43e-06 9.99e-05
Smp_062070.1 Smp_144120.1 0.95 5.74e-08 7.42e-06
Smp_084940.2 Smp_144120.1 0.94 1.31e-07 1.30e-05
Smp_098370.1 Smp_144120.1 0.95 2.84e-08 4.61e-06
Smp_099160.4 Smp_144120.1 0.90 3.01e-06 1.00e-04
Smp_103540.1 Smp_144120.1 0.94 1.57e-07 1.47e-05
Smp_159070.3 Smp_144120.1 0.94 1.35e-07 1.33e-05
Smp_159150.1 Smp_144120.1 0.92 6.94e-07 4.12e-05
Smp_200120.1 Smp_144120.1 0.91 1.22e-06 6.14e-05