Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_143870.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_143870.1 SmLINC00037-IBu 0.93 2.85e-07 2.12e-05
Smp_143870.1 SmLINC00133-IBu 0.91 1.38e-06 6.47e-05
Smp_143870.1 SmLINC00282-IBu 0.96 5.02e-09 1.35e-06
Smp_143870.1 SmLINC00294-IBu 0.81 2.00e-04 2.40e-03
Smp_143870.1 SmLINC00784-IBu 0.89 6.14e-06 1.00e-04
Smp_143870.1 SmLINC01462-IBu 0.88 1.04e-05 2.00e-04
Smp_143870.1 SmLINC01486-IBu 0.88 1.20e-05 3.00e-04
Smp_143870.1 SmLINC01637-IBu 0.94 6.16e-08 7.36e-06
Smp_143870.1 SmLINC02255-IBu 0.94 1.49e-07 1.35e-05
Smp_143870.1 SmLINC02630-IBu 0.91 2.40e-06 9.57e-05
Smp_143870.1 SmLINC02657-IBu 0.90 4.40e-06 1.00e-04
Smp_143870.1 SmLINC03056-IBu 0.86 3.56e-05 6.00e-04
Smp_143870.1 SmLINC03769-IBu 0.80 3.00e-04 3.30e-03
Smp_143870.1 SmLINC03848-IBu 0.95 1.77e-08 3.14e-06
Smp_143870.1 SmLINC03930-IBu 0.91 1.73e-06 7.57e-05
Smp_143870.1 SmLINC04075-IBu 0.82 1.00e-04 1.90e-03
Smp_143870.1 SmLINC04106-IBu 0.83 9.15e-05 1.30e-03
Smp_143870.1 SmLINC04271-IBu 0.83 1.00e-04 1.50e-03
Smp_143870.1 SmLINC04366-IBu 0.92 5.98e-07 3.57e-05
Smp_143870.1 SmLINC05284-IBu 0.97 3.37e-10 2.34e-07
Smp_143870.1 SmLINC05716-IBu 0.94 1.28e-07 1.21e-05
Smp_143870.1 SmLINC05720-IBu 0.93 4.54e-07 2.94e-05
Smp_143870.1 SmLINC06535-IBu 0.91 1.73e-06 7.59e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_143870.1 Smp_035200.3 0.91 1.66e-06 7.62e-05
Smp_036270.4 Smp_143870.1 0.96 2.37e-09 8.89e-07
Smp_111640.1 Smp_143870.1 0.94 1.83e-07 1.63e-05
Smp_112090.1 Smp_143870.1 0.93 2.60e-07 2.08e-05
Smp_143870.1 Smp_160230.1 0.90 2.88e-06 1.00e-04
Smp_184710.1 Smp_143870.1 0.91 1.96e-06 8.60e-05
Smp_205450.1 Smp_143870.1 0.91 1.28e-06 6.36e-05