Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_142980.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_142980.1 0 0.95 0.31 -2.54 -3.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142980.1 SmLINC00372-IBu 0.88 9.52e-06 2.00e-04
Smp_142980.1 SmLINC01316-IBu 0.88 1.01e-05 2.00e-04
Smp_142980.1 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_142980.1 SmLINC02646-IBu 0.83 1.00e-04 1.60e-03
Smp_142980.1 SmLINC03395-IBu 0.81 2.00e-04 2.50e-03
Smp_142980.1 SmLINC04074-IBu 0.91 1.95e-06 8.25e-05
Smp_142980.1 SmLINC06646-IBu 0.94 1.71e-07 1.48e-05
Smp_142980.1 SmLINC06836-IBu 0.84 8.72e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142980.1 Smp_017650.1 0.91 1.97e-06 8.62e-05
Smp_142980.1 Smp_032120.1 0.90 4.73e-06 1.00e-04
Smp_142980.1 Smp_034840.1 0.91 1.49e-06 7.10e-05
Smp_142980.1 Smp_059340.3 0.96 2.47e-09 9.14e-07
Smp_059530.1 Smp_142980.1 0.98 6.17e-11 8.60e-08
Smp_142980.1 Smp_083380.2 0.94 1.47e-07 1.41e-05
Smp_142980.1 Smp_084940.2 0.91 2.36e-06 9.79e-05
Smp_103540.1 Smp_142980.1 0.92 6.35e-07 3.88e-05
Smp_142980.1 Smp_168800.1 0.90 3.10e-06 1.00e-04