Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_142750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_142750.1 0 -0.52 0.37 4.05 4.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142750.1 SmLINC00001-IBu 0.83 9.47e-05 1.30e-03
Smp_142750.1 SmLINC00004-IBu 0.89 7.08e-06 2.00e-04
Smp_142750.1 SmLINC00369-IBu 0.87 2.09e-05 4.00e-04
Smp_142750.1 SmLINC00525-IBu 0.87 1.79e-05 4.00e-04
Smp_142750.1 SmLINC00548-IBu 0.86 3.26e-05 6.00e-04
Smp_142750.1 SmLINC00633-IBu 0.83 1.00e-04 1.60e-03
Smp_142750.1 SmLINC01084-IBu 0.91 1.49e-06 6.83e-05
Smp_142750.1 SmLINC01122-IBu 0.90 2.86e-06 1.00e-04
Smp_142750.1 SmLINC01139-IBu 0.81 2.00e-04 2.60e-03
Smp_142750.1 SmLINC01431-IBu 0.93 2.01e-07 1.66e-05
Smp_142750.1 SmLINC01538-IBu 0.88 1.08e-05 2.00e-04
Smp_142750.1 SmLINC01569-IBu 0.89 7.43e-06 2.00e-04
Smp_142750.1 SmLINC01733-IBu 0.93 2.79e-07 2.09e-05
Smp_142750.1 SmLINC01746-IBu 0.85 4.52e-05 7.00e-04
Smp_142750.1 SmLINC02084-IBu 0.85 5.55e-05 9.00e-04
Smp_142750.1 SmLINC02394-IBu 0.84 6.53e-05 1.00e-03
Smp_142750.1 SmLINC02546-IBu 0.88 1.05e-05 2.00e-04
Smp_142750.1 SmLINC03309-IBu 0.84 8.84e-05 1.20e-03
Smp_142750.1 SmLINC03927-IBu 0.82 1.00e-04 2.10e-03
Smp_142750.1 SmLINC04421-IBu 0.84 8.69e-05 1.20e-03
Smp_142750.1 SmLINC04423-IBu 0.89 8.32e-06 2.00e-04
Smp_142750.1 SmLINC04432-IBu 0.85 5.78e-05 9.00e-04
Smp_142750.1 SmLINC04478-IBu 0.89 5.31e-06 1.00e-04
Smp_142750.1 SmLINC04521-IBu 0.86 2.79e-05 5.00e-04
Smp_142750.1 SmLINC05147-IBu 0.81 2.00e-04 2.50e-03
Smp_142750.1 SmLINC05289-IBu 0.81 1.00e-04 2.20e-03
Smp_142750.1 SmLINC05604-IBu 0.80 2.00e-04 3.00e-03
Smp_142750.1 SmLINC06024-IBu 0.91 1.44e-06 6.67e-05
Smp_142750.1 SmLINC06444-IBu 0.82 1.00e-04 1.80e-03
Smp_142750.1 SmLINC06449-IBu 0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_142750.1 0 -0.52 0.37 4.05 4.78
Smp_192780.1 0 1.26 4.06 9.03 10.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142750.1 Smp_024180.1 0.90 2.69e-06 1.00e-04
Smp_142750.1 Smp_024180.2 0.91 2.17e-06 9.23e-05
Smp_031040.1 Smp_142750.1 0.91 1.80e-06 8.07e-05
Smp_033260.1 Smp_142750.1 0.91 1.41e-06 6.81e-05
Smp_142750.1 Smp_034980.2 0.92 9.85e-07 5.28e-05
Smp_038870.2 Smp_142750.1 0.91 1.39e-06 6.76e-05
Smp_142750.1 Smp_040970.2 0.97 1.82e-09 7.48e-07
Smp_050350.3 Smp_142750.1 0.92 6.27e-07 3.84e-05
Smp_142750.1 Smp_052280.2 0.92 5.79e-07 3.64e-05
Smp_142750.1 Smp_056460.1 0.90 2.96e-06 1.00e-04
Smp_142750.1 Smp_079420.1 0.94 1.30e-07 1.29e-05
Smp_090140.1 Smp_142750.1 0.92 6.84e-07 4.08e-05
Smp_142750.1 Smp_094050.1 0.96 3.25e-09 1.09e-06
Smp_142750.1 Smp_095410.1 0.91 1.33e-06 6.53e-05
Smp_142750.1 Smp_137000.2 0.92 1.02e-06 5.41e-05
Smp_142750.1 Smp_192780.1 0.90 4.13e-06 1.00e-04