Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_142670.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_142670.1 0 -2.17 0.03 2.46 2.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142670.1 SmLINC00171-IBu 0.81 2.00e-04 2.70e-03
Smp_142670.1 SmLINC00369-IBu 0.89 8.00e-06 2.00e-04
Smp_142670.1 SmLINC00477-IBu 0.83 9.60e-05 1.30e-03
Smp_142670.1 SmLINC00484-IBu 0.81 2.00e-04 2.40e-03
Smp_142670.1 SmLINC00525-IBu 0.83 1.00e-04 1.40e-03
Smp_142670.1 SmLINC00548-IBu 0.94 1.56e-07 1.40e-05
Smp_142670.1 SmLINC00633-IBu 0.88 9.27e-06 2.00e-04
Smp_142670.1 SmLINC00769-IBu 0.86 3.12e-05 6.00e-04
Smp_142670.1 SmLINC01066-IBu 0.83 9.81e-05 1.30e-03
Smp_142670.1 SmLINC01084-IBu 0.89 4.96e-06 1.00e-04
Smp_142670.1 SmLINC01122-IBu 0.91 1.54e-06 6.97e-05
Smp_142670.1 SmLINC01139-IBu 0.90 4.69e-06 1.00e-04
Smp_142670.1 SmLINC01171-IBu 0.81 2.00e-04 2.50e-03
Smp_142670.1 SmLINC01231-IBu 0.87 1.90e-05 4.00e-04
Smp_142670.1 SmLINC01431-IBu 0.93 2.20e-07 1.77e-05
Smp_142670.1 SmLINC01435-IBu 0.88 1.43e-05 3.00e-04
Smp_142670.1 SmLINC01538-IBu 0.94 1.63e-07 1.44e-05
Smp_142670.1 SmLINC01569-IBu 0.91 1.26e-06 6.05e-05
Smp_142670.1 SmLINC01733-IBu 0.94 9.86e-08 1.01e-05
Smp_142670.1 SmLINC01746-IBu 0.94 1.80e-07 1.54e-05
Smp_142670.1 SmLINC02084-IBu 0.89 4.87e-06 1.00e-04
Smp_142670.1 SmLINC02546-IBu 0.92 5.69e-07 3.45e-05
Smp_142670.1 SmLINC03309-IBu 0.93 4.53e-07 2.93e-05
Smp_142670.1 SmLINC03542-IBu 0.80 2.00e-04 3.10e-03
Smp_142670.1 SmLINC03693-IBu 0.89 8.77e-06 2.00e-04
Smp_142670.1 SmLINC03927-IBu 0.87 1.89e-05 4.00e-04
Smp_142670.1 SmLINC04054-IBu 0.80 2.00e-04 2.80e-03
Smp_142670.1 SmLINC04345-IBu 0.84 8.53e-05 1.20e-03
Smp_142670.1 SmLINC04432-IBu 0.96 1.32e-08 2.57e-06
Smp_142670.1 SmLINC04475-IBu 0.92 8.42e-07 4.54e-05
Smp_142670.1 SmLINC04478-IBu 0.87 1.76e-05 4.00e-04
Smp_142670.1 SmLINC04521-IBu 0.87 2.40e-05 5.00e-04
Smp_142670.1 SmLINC04637-IBu 0.85 4.31e-05 7.00e-04
Smp_142670.1 SmLINC04663-IBu 0.87 1.66e-05 3.00e-04
Smp_142670.1 SmLINC04684-IBu 0.88 1.29e-05 3.00e-04
Smp_142670.1 SmLINC05147-IBu 0.89 8.32e-06 2.00e-04
Smp_142670.1 SmLINC05171-IBu 0.81 2.00e-04 2.50e-03
Smp_142670.1 SmLINC05258-IBu 0.88 1.04e-05 2.00e-04
Smp_142670.1 SmLINC05274-IBu -0.80 2.00e-04 2.80e-03
Smp_142670.1 SmLINC05870-IBu 0.80 3.00e-04 3.30e-03
Smp_142670.1 SmLINC06010-IBu 0.89 5.52e-06 1.00e-04
Smp_142670.1 SmLINC06024-IBu 0.85 3.97e-05 7.00e-04
Smp_142670.1 SmLINC06221-IBu 0.89 7.56e-06 2.00e-04
Smp_142670.1 SmLINC06418-IBu 0.87 1.55e-05 3.00e-04
Smp_142670.1 SmLINC06444-IBu 0.92 8.02e-07 4.39e-05
Smp_142670.1 SmLINC06449-IBu 0.87 1.65e-05 3.00e-04
Smp_142670.1 SmLINC06536-IBu 0.85 5.73e-05 9.00e-04
Smp_142670.1 SmLINC06537-IBu 0.81 2.00e-04 2.50e-03
Smp_142670.1 SmLINC06543-IBu 0.88 1.49e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_142670.1 0 -2.17 0.03 2.46 2.66
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 Smp_142670.1 0.91 2.44e-06 1.00e-04
Smp_031040.1 Smp_142670.1 0.90 2.71e-06 1.00e-04
Smp_034980.2 Smp_142670.1 0.95 3.02e-08 4.80e-06
Smp_142670.1 Smp_040970.2 0.93 4.98e-07 3.27e-05
Smp_142670.1 Smp_045200.1 0.90 2.60e-06 1.00e-04
Smp_055340.2 Smp_142670.1 0.94 1.86e-07 1.65e-05
Smp_058660.1 Smp_142670.1 0.90 3.76e-06 1.00e-04
Smp_142670.1 Smp_079420.1 0.90 4.55e-06 1.00e-04
Smp_095410.1 Smp_142670.1 0.90 3.15e-06 1.00e-04
Smp_142670.1 Smp_145400.1 0.94 9.34e-08 1.03e-05
Smp_150980.2 Smp_142670.1 0.92 8.23e-07 4.65e-05
Smp_160090.2 Smp_142670.1 0.90 4.58e-06 1.00e-04
Smp_169670.1 Smp_142670.1 0.92 7.69e-07 4.43e-05
Smp_170280.1 Smp_142670.1 0.90 4.77e-06 1.00e-04
Smp_172480.1 Smp_142670.1 0.93 3.67e-07 2.65e-05
Smp_142670.1 Smp_172960.1 0.90 3.65e-06 1.00e-04
Smp_142670.1 Smp_205270.1 0.91 1.20e-06 6.07e-05