Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_142260.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142260.1 SmLINC00001-IBu -0.80 3.00e-04 3.30e-03
Smp_142260.1 SmLINC00004-IBu -0.81 2.00e-04 2.70e-03
Smp_142260.1 SmLINC00026-IBu 0.91 2.12e-06 8.76e-05
Smp_142260.1 SmLINC00037-IBu 0.93 3.13e-07 2.26e-05
Smp_142260.1 SmLINC00133-IBu 0.92 5.29e-07 3.27e-05
Smp_142260.1 SmLINC00282-IBu 0.92 1.06e-06 5.38e-05
Smp_142260.1 SmLINC00294-IBu 0.95 2.09e-08 3.52e-06
Smp_142260.1 SmLINC00369-IBu -0.80 3.00e-04 3.40e-03
Smp_142260.1 SmLINC00893-IBu 0.92 5.71e-07 3.45e-05
Smp_142260.1 SmLINC01084-IBu -0.83 9.00e-05 1.30e-03
Smp_142260.1 SmLINC01431-IBu -0.81 2.00e-04 2.40e-03
Smp_142260.1 SmLINC01462-IBu 0.93 2.05e-07 1.69e-05
Smp_142260.1 SmLINC01486-IBu 0.93 2.18e-07 1.76e-05
Smp_142260.1 SmLINC01637-IBu 0.92 7.11e-07 4.03e-05
Smp_142260.1 SmLINC02084-IBu -0.80 3.00e-04 3.40e-03
Smp_142260.1 SmLINC02255-IBu 0.82 1.00e-04 1.90e-03
Smp_142260.1 SmLINC02657-IBu 0.82 1.00e-04 2.00e-03
Smp_142260.1 SmLINC03056-IBu 0.84 8.64e-05 1.20e-03
Smp_142260.1 SmLINC03395-IBu 0.81 2.00e-04 2.40e-03
Smp_142260.1 SmLINC03486-IBu 0.83 1.00e-04 1.40e-03
Smp_142260.1 SmLINC03849-IBu 0.91 1.50e-06 6.85e-05
Smp_142260.1 SmLINC03930-IBu 0.84 7.63e-05 1.10e-03
Smp_142260.1 SmLINC04075-IBu 0.94 1.77e-07 1.52e-05
Smp_142260.1 SmLINC04106-IBu 0.82 1.00e-04 2.10e-03
Smp_142260.1 SmLINC04129-IBu 0.87 1.61e-05 3.00e-04
Smp_142260.1 SmLINC04178-IBu 0.82 1.00e-04 1.70e-03
Smp_142260.1 SmLINC04271-IBu 0.93 3.05e-07 2.23e-05
Smp_142260.1 SmLINC04366-IBu 0.80 2.00e-04 3.00e-03
Smp_142260.1 SmLINC04421-IBu -0.81 2.00e-04 2.60e-03
Smp_142260.1 SmLINC04940-IBu 0.80 2.00e-04 3.00e-03
Smp_142260.1 SmLINC05284-IBu 0.87 2.02e-05 4.00e-04
Smp_142260.1 SmLINC05604-IBu -0.80 3.00e-04 3.40e-03
Smp_142260.1 SmLINC05716-IBu 0.90 4.85e-06 1.00e-04
Smp_142260.1 SmLINC05720-IBu 0.85 5.93e-05 9.00e-04
Smp_142260.1 SmLINC05840-IBu 0.85 4.54e-05 7.00e-04
Smp_142260.1 SmLINC05887-IBu 0.86 2.68e-05 5.00e-04
Smp_142260.1 SmLINC05888-IBu 0.82 1.00e-04 1.90e-03
Smp_142260.1 SmLINC06024-IBu -0.86 3.14e-05 6.00e-04
Smp_142260.1 SmLINC06138-IBu 0.82 1.00e-04 2.00e-03
Smp_142260.1 SmLINC06489-IBu 0.81 2.00e-04 2.40e-03
Smp_142260.1 SmLINC06535-IBu 0.91 2.28e-06 9.24e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 Smp_142260.1 0.92 6.19e-07 3.81e-05
Smp_184710.1 Smp_142260.1 0.90 3.06e-06 1.00e-04
Smp_142260.1 Smp_205330.1 0.90 3.28e-06 1.00e-04