Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_142080.1 Data

Correlation between Smp_142080.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_142080.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_142080.1 0 1.40 2.62 4.98 4.98

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142080.1 SmLINC00282-IBu -0.80 2.00e-04 2.70e-03
Smp_142080.1 SmLINC02255-IBu -0.86 3.36e-05 6.00e-04
Smp_142080.1 SmLINC02630-IBu -0.82 1.00e-04 1.70e-03
Smp_142080.1 SmLINC02657-IBu -0.86 3.63e-05 6.00e-04
Smp_142080.1 SmLINC03693-IBu 0.81 1.00e-04 2.20e-03
Smp_142080.1 SmLINC03930-IBu -0.80 2.00e-04 2.70e-03
Smp_142080.1 SmLINC04475-IBu 0.85 5.67e-05 9.00e-04
Smp_142080.1 SmLINC05632-IBu 0.90 2.58e-06 1.00e-04
Smp_142080.1 SmLINC05870-IBu 0.81 1.00e-04 2.20e-03
Smp_142080.1 SmLINC05989-IBu -0.81 2.00e-04 2.60e-03
Smp_142080.1 SmLINC05990-IBu 0.89 5.71e-06 1.00e-04
Smp_142080.1 SmLINC06128-IBu -0.85 5.33e-05 8.00e-04
Smp_142080.1 SmLINC06221-IBu 0.85 4.55e-05 7.00e-04
Smp_142080.1 SmLINC06535-IBu -0.84 7.34e-05 1.10e-03
Smp_142080.1 SmLINC06543-IBu 0.80 3.00e-04 3.10e-03
Smp_142080.1 SmLINC06903-IBu -0.80 3.00e-04 3.20e-03

Correlation between Smp_142080.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_142080.1 0 1.40 2.62 4.98 4.98
Smp_176430.2 0 9.09 10.43 10.57 10.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_142080.1 Smp_040720.3 0.91 2.43e-06 1.00e-04
Smp_142080.1 Smp_055340.2 0.90 4.43e-06 1.00e-04
Smp_142080.1 Smp_176430.2 0.91 1.63e-06 7.54e-05