Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_141630.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141630.4 SmLINC00372-IBu 0.83 1.00e-04 1.50e-03
Smp_141630.4 SmLINC06646-IBu 0.83 8.89e-05 1.20e-03
Smp_141630.4 SmLINC06700-IBu 0.80 2.00e-04 3.10e-03
Smp_141630.4 SmLINC06836-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03718-IBu 0 6.68 7.60 6.73 4.75
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC05395-IBu 0 9.00 9.50 8.73 9.28
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_064590.3 0 9.71 10.57 10.06 10.55
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_174170.1 0 2.27 3.86 1.11 -0.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141630.4 SmLINC02626-IBu 0.93 3.57e-07 2.60e-05
Smp_141630.4 SmLINC02970-IBu 0.91 2.28e-06 9.54e-05
Smp_141630.4 SmLINC03132-IBu 0.93 1.97e-07 1.72e-05
Smp_141630.4 SmLINC03718-IBu 0.96 9.37e-09 2.18e-06
Smp_141630.4 SmLINC03953-IBu 0.91 1.52e-06 7.17e-05
Smp_141630.4 SmLINC05395-IBu 0.95 2.24e-08 3.92e-06
Smp_141630.4 Smp_015070.2 0.94 1.53e-07 1.45e-05
Smp_141630.4 Smp_017650.1 0.93 2.90e-07 2.25e-05
Smp_141630.4 Smp_021340.3 0.96 1.22e-08 2.61e-06
Smp_029240.1 Smp_141630.4 0.93 3.00e-07 2.30e-05
Smp_033950.3 Smp_141630.4 0.91 1.84e-06 8.21e-05
Smp_141630.4 Smp_034840.1 0.90 2.95e-06 1.00e-04
Smp_059530.1 Smp_141630.4 0.90 3.21e-06 1.00e-04
Smp_141630.4 Smp_064590.3 0.92 9.97e-07 5.32e-05
Smp_141630.4 Smp_083380.2 0.94 7.89e-08 9.21e-06
Smp_141630.4 Smp_084940.2 0.94 7.38e-08 8.79e-06
Smp_141630.4 Smp_098370.1 0.91 1.56e-06 7.30e-05
Smp_141630.4 Smp_099160.4 0.91 1.67e-06 7.67e-05
Smp_100130.2 Smp_141630.4 0.91 1.41e-06 6.81e-05
Smp_103540.1 Smp_141630.4 0.92 5.67e-07 3.58e-05
Smp_105710.2 Smp_141630.4 0.93 4.34e-07 2.98e-05
Smp_140130.1 Smp_141630.4 0.90 3.02e-06 1.00e-04
Smp_153210.1 Smp_141630.4 0.90 2.61e-06 1.00e-04
Smp_141630.4 Smp_155170.1 0.90 3.92e-06 1.00e-04
Smp_157280.1 Smp_141630.4 0.91 2.21e-06 9.34e-05
Smp_141630.4 Smp_159150.1 0.93 2.50e-07 2.03e-05
Smp_174170.1 Smp_141630.4 0.90 3.21e-06 1.00e-04