Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_141480.1 Data

Correlation between Smp_141480.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_141480.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
Smp_141480.1 0 7.59 4.10 10.61 8.33

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141480.1 SmLINC00477-IBu 0.81 2.00e-04 2.60e-03
Smp_141480.1 SmLINC01171-IBu 0.80 3.00e-04 3.30e-03
Smp_141480.1 SmLINC01433-IBu 0.81 2.00e-04 2.40e-03
Smp_141480.1 SmLINC01822-IBu 0.83 1.00e-04 1.60e-03
Smp_141480.1 SmLINC02581-IBu 0.89 5.91e-06 1.00e-04
Smp_141480.1 SmLINC03236-IBu 0.82 1.00e-04 1.90e-03
Smp_141480.1 SmLINC03542-IBu 0.81 2.00e-04 2.50e-03
Smp_141480.1 SmLINC03693-IBu 0.82 1.00e-04 2.10e-03
Smp_141480.1 SmLINC04054-IBu 0.84 6.05e-05 9.00e-04
Smp_141480.1 SmLINC04481-IBu 0.88 1.40e-05 3.00e-04
Smp_141480.1 SmLINC04747-IBu 0.80 3.00e-04 3.30e-03
Smp_141480.1 SmLINC04769-IBu 0.80 2.00e-04 2.90e-03
Smp_141480.1 SmLINC05009-IBu 0.90 2.99e-06 1.00e-04
Smp_141480.1 SmLINC05171-IBu 0.83 1.00e-04 1.40e-03
Smp_141480.1 SmLINC05990-IBu 0.80 2.00e-04 3.10e-03
Smp_141480.1 SmLINC06007-IBu 0.81 2.00e-04 2.70e-03
Smp_141480.1 SmLINC06221-IBu 0.82 1.00e-04 1.80e-03
Smp_141480.1 SmLINC06538-IBu 0.80 2.00e-04 2.80e-03

Correlation between Smp_141480.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05746-IBu 0 1.84 0.26 4.70 1.98
Smp_000900.1 0 3.50 3.43 6.11 5.02
Smp_045220.2 0 0.93 0.81 4.20 3.26
Smp_072100.1 0 2.65 -2.16 5.21 3.94
Smp_099770.1 0 1.49 1.38 4.72 3.40
Smp_129200.1 0 2.53 1.15 4.98 3.48
Smp_132750.1 0 2.73 -1.83 5.01 4.29
Smp_137980.1 0 4.49 5.09 6.98 5.86
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_149990.2 0 8.45 0.00 9.97 8.86
Smp_161650.1 0 4.64 4.26 7.15 5.86
Smp_194950.1 0 5.18 2.81 7.66 3.82

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141480.1 SmLINC05009-IBu 0.90 2.99e-06 1.00e-04
Smp_141480.1 SmLINC05746-IBu 0.91 2.13e-06 9.10e-05
Smp_000900.1 Smp_141480.1 0.92 6.13e-07 3.78e-05
Smp_141480.1 Smp_045220.2 0.95 2.15e-08 3.81e-06
Smp_141480.1 Smp_072100.1 0.95 2.37e-08 4.07e-06
Smp_141480.1 Smp_099770.1 0.93 4.17e-07 2.89e-05
Smp_129200.1 Smp_141480.1 0.92 6.11e-07 3.78e-05
Smp_132750.1 Smp_141480.1 0.91 2.11e-06 9.04e-05
Smp_137980.1 Smp_141480.1 0.91 2.21e-06 9.33e-05
Smp_141480.1 Smp_149990.2 0.95 3.88e-08 5.69e-06
Smp_141480.1 Smp_161650.1 0.94 7.58e-08 8.96e-06
Smp_194950.1 Smp_141480.1 0.96 6.58e-09 1.73e-06