Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_141450.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_141450.2 0 3.72 3.76 3.69 9.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141450.2 SmLINC00007-IBu 0.84 7.48e-05 1.10e-03
Smp_141450.2 SmLINC01520-IBu 0.90 2.68e-06 1.00e-04
Smp_141450.2 SmLINC02029-IBu 0.94 1.88e-07 1.59e-05
Smp_141450.2 SmLINC02376-IBu 0.81 2.00e-04 2.40e-03
Smp_141450.2 SmLINC02539-IBu 0.86 3.89e-05 7.00e-04
Smp_141450.2 SmLINC02540-IBu 0.80 3.00e-04 3.20e-03
Smp_141450.2 SmLINC02577-IBu 0.89 7.85e-06 2.00e-04
Smp_141450.2 SmLINC02776-IBu 0.82 1.00e-04 1.70e-03
Smp_141450.2 SmLINC02783-IBu 0.91 1.84e-06 7.94e-05
Smp_141450.2 SmLINC02786-IBu 0.98 1.03e-10 1.08e-07
Smp_141450.2 SmLINC03658-IBu 0.91 2.13e-06 8.80e-05
Smp_141450.2 SmLINC04235-IBu 0.91 1.48e-06 6.78e-05
Smp_141450.2 SmLINC04237-IBu 0.87 2.30e-05 4.00e-04
Smp_141450.2 SmLINC04627-IBu 0.88 1.42e-05 3.00e-04
Smp_141450.2 SmLINC04896-IBu 0.91 1.39e-06 6.50e-05
Smp_141450.2 SmLINC05404-IBu 0.94 9.63e-08 1.00e-05
Smp_141450.2 SmLINC05604-IBu 0.81 2.00e-04 2.60e-03
Smp_141450.2 SmLINC05684-IBu 0.94 7.17e-08 8.17e-06
Smp_141450.2 SmLINC06239-IBu 0.90 3.81e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_141450.2 0 3.72 3.76 3.69 9.11
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_141450.2 0.90 2.75e-06 1.00e-04
Smp_141450.2 Smp_037720.1 0.90 3.44e-06 1.00e-04
Smp_041540.1 Smp_141450.2 0.99 1.18e-12 7.31e-09
Smp_141450.2 Smp_070540.1 0.97 1.89e-09 7.67e-07
Smp_089270.1 Smp_141450.2 0.93 3.24e-07 2.43e-05
Smp_141450.2 Smp_105450.1 0.97 1.09e-09 5.41e-07
Smp_141450.2 Smp_105450.2 0.96 2.98e-09 1.03e-06
Smp_126340.1 Smp_141450.2 0.96 4.26e-09 1.30e-06
Smp_141450.2 Smp_130100.1 0.91 2.37e-06 9.83e-05
Smp_141450.2 Smp_130970.1 0.90 3.67e-06 1.00e-04
Smp_141450.2 Smp_136730.1 0.94 1.26e-07 1.27e-05
Smp_137460.1 Smp_141450.2 0.98 8.04e-11 1.01e-07
Smp_141450.2 Smp_137700.1 0.93 3.76e-07 2.69e-05
Smp_141450.2 Smp_138360.1 0.95 3.06e-08 4.84e-06
Smp_139160.1 Smp_141450.2 0.94 9.80e-08 1.06e-05
Smp_141450.2 Smp_139240.1 0.90 3.08e-06 1.00e-04
Smp_152150.1 Smp_141450.2 0.98 4.36e-12 1.65e-08
Smp_162320.1 Smp_141450.2 0.90 4.52e-06 1.00e-04
Smp_164400.1 Smp_141450.2 0.99 8.02e-15 3.50e-10
Smp_141450.2 Smp_167830.1 0.93 4.05e-07 2.83e-05
Smp_170840.1 Smp_141450.2 0.95 5.45e-08 7.16e-06
Smp_181070.1 Smp_141450.2 0.95 5.28e-08 7.01e-06
Smp_141450.2 Smp_187140.1 0.90 2.76e-06 1.00e-04
Smp_141450.2 Smp_194910.1 0.92 6.02e-07 3.74e-05
Smp_141450.2 Smp_205580.1 0.90 4.81e-06 1.00e-04