Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_141340.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
Smp_141340.1 0 1.89 -2.22 3.40 5.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141340.1 SmLINC03849-IBu -0.62 1.30e-02 4.21e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_141340.1 0 1.89 -2.22 3.40 5.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141340.1 SmLINC00001-IBu 0.86 3.47e-05 6.00e-04
Smp_141340.1 SmLINC00004-IBu 0.84 6.95e-05 1.00e-03
Smp_141340.1 SmLINC02376-IBu 0.84 6.45e-05 1.00e-03
Smp_141340.1 SmLINC02394-IBu 0.80 2.00e-04 2.90e-03
Smp_141340.1 SmLINC03326-IBu 0.81 2.00e-04 2.50e-03
Smp_141340.1 SmLINC04235-IBu 0.86 3.76e-05 6.00e-04
Smp_141340.1 SmLINC04627-IBu 0.81 2.00e-04 2.30e-03
Smp_141340.1 SmLINC06239-IBu 0.85 4.73e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_105680.2 0 -0.20 -12.36 0.53 1.97
Smp_141340.1 0 1.89 -2.22 3.40 5.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.1 Smp_141340.1 0.91 1.67e-06 7.69e-05
Smp_105680.2 Smp_141340.1 0.93 3.20e-07 2.41e-05