Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_141170.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_141170.1 0 0.00 0.00 5.53 8.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141170.1 SmLINC00001-IBu 0.83 9.87e-05 1.40e-03
Smp_141170.1 SmLINC00007-IBu 0.95 3.73e-08 5.22e-06
Smp_141170.1 SmLINC01520-IBu 0.89 4.91e-06 1.00e-04
Smp_141170.1 SmLINC02029-IBu 0.84 8.76e-05 1.20e-03
Smp_141170.1 SmLINC02394-IBu 0.85 4.13e-05 7.00e-04
Smp_141170.1 SmLINC02539-IBu 0.90 2.55e-06 1.00e-04
Smp_141170.1 SmLINC02540-IBu 0.94 9.62e-08 9.99e-06
Smp_141170.1 SmLINC02577-IBu 0.92 1.12e-06 5.57e-05
Smp_141170.1 SmLINC02776-IBu 0.97 5.88e-10 3.34e-07
Smp_141170.1 SmLINC02783-IBu 0.93 5.01e-07 3.15e-05
Smp_141170.1 SmLINC02786-IBu 0.86 2.84e-05 5.00e-04
Smp_141170.1 SmLINC03326-IBu 0.90 3.64e-06 1.00e-04
Smp_141170.1 SmLINC04237-IBu 0.95 4.23e-08 5.69e-06
Smp_141170.1 SmLINC04627-IBu 0.89 6.75e-06 2.00e-04
Smp_141170.1 SmLINC05289-IBu 0.81 2.00e-04 2.60e-03
Smp_141170.1 SmLINC05684-IBu 0.90 4.25e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_020080.2 0 6.03 4.29 10.17 11.72
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_141170.1 0 0.00 0.00 5.53 8.67
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_141170.1 0.94 1.66e-07 1.53e-05
Smp_141170.1 Smp_020080.2 0.93 1.96e-07 1.72e-05
Smp_083430.1 Smp_141170.1 0.91 1.57e-06 7.36e-05
Smp_123880.1 Smp_141170.1 0.92 8.63e-07 4.81e-05
Smp_126340.1 Smp_141170.1 0.90 3.91e-06 1.00e-04
Smp_141170.1 Smp_131410.1 0.91 1.94e-06 8.53e-05
Smp_141170.1 Smp_136730.1 0.91 1.43e-06 6.88e-05
Smp_137720.1 Smp_141170.1 0.91 2.20e-06 9.31e-05
Smp_141170.1 Smp_139240.1 0.92 9.08e-07 4.98e-05
Smp_141170.1 Smp_163700.1 0.94 7.46e-08 8.86e-06
Smp_141170.1 Smp_187140.1 0.91 2.35e-06 9.75e-05
Smp_194380.1 Smp_141170.1 0.93 2.46e-07 2.01e-05
Smp_196830.1 Smp_141170.1 0.90 3.00e-06 1.00e-04
Smp_141170.1 Smp_205580.1 0.91 1.25e-06 6.26e-05