Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_141160.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_141160.1 0 0.62 1.59 2.79 5.35

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_141160.1 SmLINC00001-IBu 0.86 2.95e-05 5.00e-04
Smp_141160.1 SmLINC00004-IBu 0.85 4.88e-05 8.00e-04
Smp_141160.1 SmLINC01520-IBu 0.85 4.57e-05 8.00e-04
Smp_141160.1 SmLINC02029-IBu 0.88 1.04e-05 2.00e-04
Smp_141160.1 SmLINC02376-IBu 0.90 3.34e-06 1.00e-04
Smp_141160.1 SmLINC02539-IBu 0.83 1.00e-04 1.60e-03
Smp_141160.1 SmLINC02577-IBu 0.85 4.23e-05 7.00e-04
Smp_141160.1 SmLINC02783-IBu 0.87 1.82e-05 4.00e-04
Smp_141160.1 SmLINC02786-IBu 0.85 4.51e-05 7.00e-04
Smp_141160.1 SmLINC03326-IBu 0.81 2.00e-04 2.40e-03
Smp_141160.1 SmLINC03658-IBu 0.88 1.01e-05 2.00e-04
Smp_141160.1 SmLINC04235-IBu 0.96 6.80e-09 1.65e-06
Smp_141160.1 SmLINC04423-IBu 0.80 2.00e-04 2.80e-03
Smp_141160.1 SmLINC04627-IBu 0.88 1.14e-05 2.00e-04
Smp_141160.1 SmLINC04896-IBu 0.84 6.38e-05 1.00e-03
Smp_141160.1 SmLINC05404-IBu 0.90 3.22e-06 1.00e-04
Smp_141160.1 SmLINC05604-IBu 0.84 8.51e-05 1.20e-03
Smp_141160.1 SmLINC05684-IBu 0.90 4.01e-06 1.00e-04
Smp_141160.1 SmLINC06239-IBu 0.98 5.12e-11 6.96e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_141160.1 0 0.62 1.59 2.79 5.35
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_141160.1 0.93 2.11e-07 1.80e-05
Smp_004420.3 Smp_141160.1 0.92 1.11e-06 5.75e-05
Smp_016490.2 Smp_141160.1 0.91 1.29e-06 6.40e-05
Smp_141160.1 Smp_028870.1 0.90 4.03e-06 1.00e-04
Smp_141160.1 Smp_102780.1 0.90 3.38e-06 1.00e-04
Smp_141160.1 Smp_105450.2 0.91 1.42e-06 6.84e-05
Smp_141160.1 Smp_130100.1 0.93 2.43e-07 1.99e-05
Smp_141160.1 Smp_130970.1 0.95 1.70e-08 3.26e-06
Smp_137460.1 Smp_141160.1 0.95 6.01e-08 7.65e-06
Smp_141160.1 Smp_137700.1 0.92 6.72e-07 4.03e-05
Smp_141160.1 Smp_138360.1 0.95 5.39e-08 7.11e-06
Smp_139160.1 Smp_141160.1 0.93 3.75e-07 2.69e-05
Smp_144440.1 Smp_141160.1 0.91 1.63e-06 7.55e-05
Smp_152150.1 Smp_141160.1 0.93 4.80e-07 3.19e-05
Smp_159650.1 Smp_141160.1 0.93 2.64e-07 2.11e-05
Smp_162320.1 Smp_141160.1 0.91 2.10e-06 9.01e-05
Smp_164400.1 Smp_141160.1 0.92 5.24e-07 3.39e-05
Smp_181070.1 Smp_141160.1 0.93 4.13e-07 2.87e-05
Smp_141160.1 Smp_194910.1 0.90 2.58e-06 1.00e-04
Smp_203030.1 Smp_141160.1 0.92 7.50e-07 4.36e-05