Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_140680.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140680.2 SmLINC06535-IBu 0.80 3.00e-04 3.20e-03
Smp_140680.2 SmLINC06892-IBu 0.89 5.64e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_203770.1 0 -0.07 -1.61 -3.55 -6.15
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004230.1 Smp_140680.2 0.90 4.46e-06 1.00e-04
Smp_140680.2 Smp_005860.3 0.92 1.06e-06 5.57e-05
Smp_140680.2 Smp_032990.1 0.93 4.00e-07 2.81e-05
Smp_056680.2 Smp_140680.2 0.90 2.72e-06 1.00e-04
Smp_056680.3 Smp_140680.2 0.90 2.72e-06 1.00e-04
Smp_140680.2 Smp_061580.1 0.94 1.49e-07 1.42e-05
Smp_066010.1 Smp_140680.2 0.91 1.23e-06 6.18e-05
Smp_067980.1 Smp_140680.2 0.97 2.39e-10 2.03e-07
Smp_077690.1 Smp_140680.2 0.93 5.06e-07 3.31e-05
Smp_083340.4 Smp_140680.2 0.91 1.57e-06 7.34e-05
Smp_140680.2 Smp_085290.3 0.91 2.36e-06 9.79e-05
Smp_100790.1 Smp_140680.2 0.90 4.46e-06 1.00e-04
Smp_110400.3 Smp_140680.2 0.90 2.92e-06 1.00e-04
Smp_140680.2 Smp_113760.1 0.94 8.69e-08 9.83e-06
Smp_114740.1 Smp_140680.2 0.90 4.46e-06 1.00e-04
Smp_159130.1 Smp_140680.2 0.91 1.37e-06 6.69e-05
Smp_167350.1 Smp_140680.2 0.93 3.94e-07 2.78e-05
Smp_140680.2 Smp_182770.1 0.90 3.30e-06 1.00e-04
Smp_140680.2 Smp_184460.1 0.90 2.59e-06 1.00e-04
Smp_188600.1 Smp_140680.2 0.93 3.73e-07 2.68e-05
Smp_188900.1 Smp_140680.2 0.92 5.46e-07 3.49e-05
Smp_140680.2 Smp_199840.1 0.90 3.35e-06 1.00e-04
Smp_201900.1 Smp_140680.2 0.94 1.92e-07 1.69e-05
Smp_202140.1 Smp_140680.2 0.98 1.24e-10 1.33e-07
Smp_203770.1 Smp_140680.2 0.92 7.30e-07 4.27e-05
Smp_206150.1 Smp_140680.2 0.91 1.24e-06 6.24e-05